Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1847

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357162 to 359735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362950 to 364987 10216

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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359,459 + 10214 mRNA_1846 0.89 1.0
359,471 - 10214 mRNA_1846 0.90 0.9
359,473 + 10214 mRNA_1846 0.90 3.1
359,492 + 0.2
359,503 + 0.7
359,595 - -0.5
359,598 + -0.1
359,606 + -0.3
359,609 - -1.2
359,624 + -1.9
359,731 - -0.0
359,759 - 0.2
359,776 + -2.0
359,781 - -0.8
359,786 + -0.4
359,788 + 0.1
359,902 + 0.7
359,902 - 0.1
359,909 + -2.3
359,912 + 0.7
359,915 + -2.3
359,954 + 1.2
359,961 - 0.1
360,001 + -1.4
360,003 - 0.2
360,003 + -0.4
360,022 - -0.5
360,032 + -0.4
360,047 + -1.5
360,051 + 1.1
360,057 - -0.5
360,060 + -0.4
360,070 - -1.7
360,071 + -1.2
360,073 + 1.4
360,077 + 0.0
360,087 + -0.9
360,093 - -1.0
360,093 + -0.0
360,105 + 0.8
360,105 + -0.1
360,115 - -1.8
360,132 + 0.6
360,135 - 0.7
360,140 - 0.5
360,147 + -0.2
360,148 - -1.3
360,148 - 0.8
360,148 - -0.4
360,149 + 0.0
360,150 - -0.1
360,151 + 0.2
360,151 + 0.4
360,156 + -0.0
360,156 + -0.7
360,157 + -1.4
360,160 - -0.1
360,160 + -0.3
360,161 - -1.8
360,161 + 0.4
360,161 - 1.2
360,165 + 2.0
360,168 + 0.5
360,171 + 0.7
360,175 + 0.4
360,175 + -0.5
360,177 + 1.9
360,177 + -1.4
360,181 - 1.5
360,181 - -4.2
360,186 - -2.3
360,187 + 0.6
360,192 - -1.4
360,199 - 1.5
360,201 + 0.7
360,203 - -0.5
360,203 + -0.7
360,203 - 0.4
360,204 - 1.4
360,204 + 0.7
360,204 + -0.9
360,205 - 0.3
360,213 - -0.3
360,224 - 0.7
360,232 - 0.5
360,233 + -0.6
360,237 + 0.2
360,241 + 1.8
360,241 + 1.2
360,242 + 0.6
360,242 - -1.0
360,243 - -0.9
360,244 - -1.6
360,244 - -0.6
360,246 + 0.2
360,246 + -0.0
360,246 + 0.3
360,249 + -1.0
360,249 - 0.5
360,251 + -2.2
360,251 + -1.2
360,252 + -3.0
360,254 - -1.1
360,256 + -0.5
360,260 + -2.8
360,260 - -1.1
360,263 + 1.8
360,264 - 1.4
360,265 + 0.9
360,267 - 2.4
360,268 + -0.9
360,268 + -1.7
360,268 + 0.3
360,268 + 0.1
360,269 + -0.1
360,269 - 1.6
360,272 - 1.1
360,274 - -0.2
360,276 - -0.5
360,277 - 0.0
360,280 - -2.7
360,285 - 0.0
360,290 + -0.6
360,304 + 0.0
360,417 - 0.5
360,431 - -0.4
360,442 + -0.2
360,558 + 10215 mRNA_1847 0.12 -0.3
360,691 - 10215 mRNA_1847 0.19 -0.7
360,875 - 10215 mRNA_1847 0.28 0.1
360,892 - 10215 mRNA_1847 0.29 1.0
361,162 - 10215 mRNA_1847 0.43 -0.0
361,289 + 10215 mRNA_1847 0.49 -0.1
361,905 - 10215 mRNA_1847 0.80 0.3
361,912 + 10215 mRNA_1847 0.80 1.1
361,933 + 10215 mRNA_1847 0.81 -1.2
362,009 - 10215 mRNA_1847 0.85 -0.7
362,329 + -1.4
362,352 - 2.4
362,382 - 1.0
362,404 - -0.7
362,488 - 2.7
362,489 - 0.5
362,509 - -1.6
362,516 + -2.5
362,518 - -0.4
362,519 - 0.3
362,527 + -0.3
362,538 - 0.6
362,541 + 0.5
362,545 + 0.4
362,545 + 0.4
362,555 + 1.3
362,557 + -0.7
362,559 + -0.7
362,560 - -0.8
362,564 - 1.9
362,567 - -0.3
362,571 - 0.3
362,571 + 0.1
362,584 - -0.1
362,589 + -0.5
362,605 - -0.7
362,628 - 0.6
362,639 - 0.9
362,640 + 1.7
362,641 + -0.3
362,643 + 0.8
362,644 + 0.2
362,647 - 0.9
362,676 - 1.0
362,676 + 2.3
362,689 - 1.4
362,692 + -0.3
362,693 + 0.6
362,698 - -0.3
362,698 - 1.1
362,702 - 0.7
362,708 + 1.2
362,717 - -0.7
362,717 + 0.2
362,721 - 1.0
362,726 - -0.9
362,731 - 0.9
362,732 + 0.3
362,735 - 0.5
362,750 + 0.5
362,751 + 0.0
362,752 + -1.9
362,753 + 0.7
362,753 + -0.2
362,758 - -0.6
362,764 - -0.2
362,766 - -1.9
362,775 + -2.5
362,775 - 1.5
362,776 + -0.3
362,778 + 1.5
362,789 + 0.6
362,797 - -0.8
362,801 + 0.1
362,803 + 1.5
362,812 + -0.5
362,813 + 1.7
362,911 + -0.0
362,912 - -1.1
362,945 - -0.4
362,949 - -0.7
363,058 + 1.0
363,086 - 0.3
363,093 + 1.5
363,097 - -3.0
363,230 - 10216 mRNA_1848 0.14 0.6
363,257 + 10216 mRNA_1848 0.15 -0.3