Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1846

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1845: 10213 - K06127 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 355986 to 356917 10213 mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357162 to 359735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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356,934 - 1.0
357,121 - 1.8
357,148 - 0.4
357,384 - 0.9
357,728 + 10214 mRNA_1846 0.22 -0.0
357,999 + 10214 mRNA_1846 0.33 -1.6
358,010 + 10214 mRNA_1846 0.33 -1.0
358,138 - 10214 mRNA_1846 0.38 0.3
358,448 + 10214 mRNA_1846 0.50 -0.6
358,457 - 10214 mRNA_1846 0.50 -0.2
358,713 - 10214 mRNA_1846 0.60 -0.6
358,721 - 10214 mRNA_1846 0.61 1.9
358,731 + 10214 mRNA_1846 0.61 -0.3
358,735 + 10214 mRNA_1846 0.61 1.2
358,882 - 10214 mRNA_1846 0.67 1.3
359,021 - 10214 mRNA_1846 0.72 0.2
359,022 + 10214 mRNA_1846 0.72 0.0
359,168 + 10214 mRNA_1846 0.78 0.0
359,459 + 10214 mRNA_1846 0.89 1.0
359,471 - 10214 mRNA_1846 0.90 0.9
359,473 + 10214 mRNA_1846 0.90 3.1
359,492 + 0.2
359,503 + 0.7
359,595 - -0.5
359,598 + -0.1
359,606 + -0.3
359,609 - -1.2
359,624 + -1.9
359,731 - -0.0
359,759 - 0.2
359,776 + -2.0
359,781 - -0.8
359,786 + -0.4
359,788 + 0.1
359,902 + 0.7
359,902 - 0.1
359,909 + -2.3
359,912 + 0.7
359,915 + -2.3
359,954 + 1.2
359,961 - 0.1
360,001 + -1.4
360,003 - 0.2
360,003 + -0.4
360,022 - -0.5
360,032 + -0.4
360,047 + -1.5
360,051 + 1.1
360,057 - -0.5
360,060 + -0.4
360,070 - -1.7
360,071 + -1.2
360,073 + 1.4
360,077 + 0.0
360,087 + -0.9
360,093 - -1.0
360,093 + -0.0
360,105 + 0.8
360,105 + -0.1
360,115 - -1.8
360,132 + 0.6
360,135 - 0.7
360,140 - 0.5
360,147 + -0.2
360,148 - -1.3
360,148 - 0.8
360,148 - -0.4
360,149 + 0.0
360,150 - -0.1
360,151 + 0.2
360,151 + 0.4
360,156 + -0.0
360,156 + -0.7
360,157 + -1.4
360,160 - -0.1
360,160 + -0.3
360,161 - -1.8
360,161 + 0.4
360,161 - 1.2
360,165 + 2.0
360,168 + 0.5
360,171 + 0.7
360,175 + 0.4
360,175 + -0.5
360,177 + 1.9
360,177 + -1.4
360,181 - 1.5
360,181 - -4.2
360,186 - -2.3
360,187 + 0.6
360,192 - -1.4
360,199 - 1.5
360,201 + 0.7
360,203 - -0.5
360,203 + -0.7
360,203 - 0.4
360,204 - 1.4
360,204 + 0.7
360,204 + -0.9
360,205 - 0.3
360,213 - -0.3
360,224 - 0.7
360,232 - 0.5
360,233 + -0.6
360,237 + 0.2
360,241 + 1.8
360,241 + 1.2
360,242 + 0.6
360,242 - -1.0
360,243 - -0.9
360,244 - -1.6
360,244 - -0.6
360,246 + 0.2
360,246 + -0.0
360,246 + 0.3
360,249 + -1.0
360,249 - 0.5
360,251 + -2.2
360,251 + -1.2
360,252 + -3.0
360,254 - -1.1
360,256 + -0.5
360,260 + -2.8
360,260 - -1.1
360,263 + 1.8
360,264 - 1.4
360,265 + 0.9
360,267 - 2.4
360,268 + -0.9
360,268 + -1.7
360,268 + 0.3
360,268 + 0.1
360,269 + -0.1
360,269 - 1.6
360,272 - 1.1
360,274 - -0.2
360,276 - -0.5
360,277 - 0.0
360,280 - -2.7
360,285 - 0.0
360,290 + -0.6
360,304 + 0.0
360,417 - 0.5
360,431 - -0.4
360,442 + -0.2
360,558 + 10215 mRNA_1847 0.12 -0.3
360,691 - 10215 mRNA_1847 0.19 -0.7