Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1843

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211 mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353890 to 355492 10212

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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346,774 + 10210 mRNA_1842 0.82 -0.9
346,782 - 10210 mRNA_1842 0.82 0.7
346,910 - 10210 mRNA_1842 0.88 -1.1
346,921 + 10210 mRNA_1842 0.88 0.4
346,924 - 10210 mRNA_1842 0.88 0.3
347,075 + -0.0
347,187 - -0.0
347,214 + 0.8
347,335 + 0.3
347,346 - -2.0
347,361 - -1.1
347,363 - 0.1
347,365 + -1.9
347,371 - 0.3
347,401 - 2.4
347,515 + 0.6
347,525 + 0.2
347,529 - 2.3
347,676 - 0.0
347,794 - 1.3
347,806 + -1.6
347,832 + 1.4
347,836 + 0.9
347,949 - 0.3
347,955 + -2.2
348,222 + 10211 mRNA_1843 0.11 0.9
348,268 - 10211 mRNA_1843 0.12 0.8
348,360 - 10211 mRNA_1843 0.14 -0.1
348,398 + 10211 mRNA_1843 0.14 0.5
348,406 + 10211 mRNA_1843 0.14 0.3
348,686 + 10211 mRNA_1843 0.19 -0.4
348,701 + 10211 mRNA_1843 0.19 0.5
349,262 + 10211 mRNA_1843 0.28 1.8
349,452 + 10211 mRNA_1843 0.31 0.3
349,530 - 10211 mRNA_1843 0.33 0.3
349,549 + 10211 mRNA_1843 0.33 -0.2
349,572 + 10211 mRNA_1843 0.33 1.9
349,588 + 10211 mRNA_1843 0.34 0.4
349,712 - 10211 mRNA_1843 0.36 0.2
349,807 - 10211 mRNA_1843 0.37 0.4
350,158 + 10211 mRNA_1843 0.43 0.6
351,293 - 10211 mRNA_1843 0.61 -0.1
352,105 + 10211 mRNA_1843 0.75 0.7
352,402 - 10211 mRNA_1843 0.80 1.3
352,780 - 10211 mRNA_1843 0.86 -0.7
352,896 - 10211 mRNA_1843 0.88 1.2
352,923 - 10211 mRNA_1843 0.88 -1.2
352,928 + 10211 mRNA_1843 0.88 -0.4
353,169 - 1.2
353,520 - -0.0
353,688 - 1.3
353,690 - -0.7
353,809 + 0.8
353,811 + -1.5
353,818 - 0.2
353,821 - -0.1
353,822 + -0.6
353,835 - 0.4
353,875 - 0.2
354,073 - 10212 mRNA_1844 0.11 -1.2