Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1842

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342756 to 344236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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344,164 - -0.9
344,262 - -1.7
344,331 - -0.2
344,560 - 0.7
344,567 + -0.5
344,583 - 1.1
344,590 - 0.9
344,610 - 2.2
344,643 - 1.3
344,653 + 0.1
344,691 + 0.3
344,693 - -1.8
344,704 + 0.3
344,704 - 1.3
344,727 + -1.6
344,748 + 0.4
344,863 - -1.1
345,015 + 0.3
345,034 - -2.0
345,303 + 10210 mRNA_1842 0.20 -0.7
345,453 - 10210 mRNA_1842 0.27 -0.1
345,470 + 10210 mRNA_1842 0.27 2.1
345,757 - 10210 mRNA_1842 0.39 0.4
345,773 + 10210 mRNA_1842 0.40 -0.0
345,902 + 10210 mRNA_1842 0.46 0.4
346,184 - 10210 mRNA_1842 0.57 1.9
346,774 + 10210 mRNA_1842 0.82 -0.9
346,782 - 10210 mRNA_1842 0.82 0.7
346,910 - 10210 mRNA_1842 0.88 -1.1
346,921 + 10210 mRNA_1842 0.88 0.4
346,924 - 10210 mRNA_1842 0.88 0.3
347,075 + -0.0
347,187 - -0.0
347,214 + 0.8
347,335 + 0.3
347,346 - -2.0
347,361 - -1.1
347,363 - 0.1
347,365 + -1.9
347,371 - 0.3
347,401 - 2.4
347,515 + 0.6
347,525 + 0.2
347,529 - 2.3
347,676 - 0.0
347,794 - 1.3
347,806 + -1.6
347,832 + 1.4
347,836 + 0.9
347,949 - 0.3
347,955 + -2.2