Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1821

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189 mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294810 to 296545 10190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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290,806 + -1.0
290,952 - 2.6
291,258 - 10188 mRNA_1820 0.40 2.3
291,269 - 10188 mRNA_1820 0.41 -1.6
291,271 - 10188 mRNA_1820 0.42 1.2
291,275 - 10188 mRNA_1820 0.42 1.2
291,276 - 10188 mRNA_1820 0.42 0.7
291,278 + 10188 mRNA_1820 0.43 -0.7
291,281 - 10188 mRNA_1820 0.43 -0.7
291,283 + 10188 mRNA_1820 0.43 -0.0
291,283 - 10188 mRNA_1820 0.43 1.7
291,289 + 10188 mRNA_1820 0.44 0.2
291,289 + 10188 mRNA_1820 0.44 2.2
291,290 - 10188 mRNA_1820 0.44 -0.1
291,297 + 10188 mRNA_1820 0.45 -1.2
291,299 + 10188 mRNA_1820 0.46 0.7
291,300 - 10188 mRNA_1820 0.46 0.4
291,317 - 10188 mRNA_1820 0.48 -3.3
291,349 + 10188 mRNA_1820 0.53 2.5
291,352 - 10188 mRNA_1820 0.53 1.1
291,358 - 10188 mRNA_1820 0.54 0.2
291,370 + 10188 mRNA_1820 0.56 -0.3
291,371 + 10188 mRNA_1820 0.56 -0.7
291,416 - 10188 mRNA_1820 0.62 0.4
291,416 + 10188 mRNA_1820 0.62 -0.7
291,437 + 10188 mRNA_1820 0.65 -0.3
291,438 + 10188 mRNA_1820 0.65 0.6
291,520 + 10188 mRNA_1820 0.77 0.7
291,552 - 10188 mRNA_1820 0.82 1.0
291,557 - 10188 mRNA_1820 0.82 2.6
291,581 + 10188 mRNA_1820 0.86 -0.4
291,582 - 10188 mRNA_1820 0.86 0.3
291,587 + 10188 mRNA_1820 0.86 0.7
291,596 + 10188 mRNA_1820 0.88 0.2
291,601 + 10188 mRNA_1820 0.88 -0.4
291,620 - -0.2
291,762 - -1.3
291,781 - 0.3
291,799 - 0.3
291,933 - 0.9
291,962 - 10189 mRNA_1821 0.10 -0.6
292,036 - 10189 mRNA_1821 0.13 0.5
292,042 - 10189 mRNA_1821 0.14 -0.3
292,049 + 10189 mRNA_1821 0.14 0.5
292,064 - 10189 mRNA_1821 0.15 2.2
292,222 - 10189 mRNA_1821 0.21 0.8
292,240 + 10189 mRNA_1821 0.22 -0.1
292,380 - 10189 mRNA_1821 0.28 -0.3
292,403 - 10189 mRNA_1821 0.29 -0.3
292,501 - 10189 mRNA_1821 0.33 0.9
293,253 - 10189 mRNA_1821 0.64 -0.3
293,542 + 10189 mRNA_1821 0.76 1.7
293,793 + 10189 mRNA_1821 0.87 -1.0
293,854 - 10189 mRNA_1821 0.89 0.8
293,983 - 0.5
294,137 - 1.6
294,190 - 1.2
294,407 - -1.6
294,410 + -1.6
294,451 + 0.3
294,562 - -0.2
295,045 - 10190 mRNA_1822 0.14 -1.2