Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1816

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280165 to 281761 10183 mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282501 to 284889 10184 mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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281,657 - 0.5
281,659 - 0.4
281,661 - 0.8
281,682 + 1.1
281,748 + -0.0
281,762 - 0.8
281,784 - 2.5
281,785 + 0.4
281,803 - -0.3
281,808 - 0.9
281,810 + 0.2
281,826 - -3.0
281,827 + -0.4
281,859 - -0.3
281,896 + 1.0
281,935 + -1.9
281,950 + -0.0
281,978 - -0.9
281,981 + 0.2
282,003 - -0.6
282,004 + -1.3
282,008 - 0.5
282,015 + 0.8
282,019 - 0.6
282,025 + -0.4
282,040 + 0.3
282,076 + -2.0
282,184 + -0.2
282,195 - 0.5
282,209 + 0.2
282,212 + -0.4
282,215 - 0.1
282,240 + -0.2
282,242 - 0.8
282,280 + -1.6
282,282 + -0.8
282,287 + 1.4
282,306 - -2.2
282,310 + 0.6
282,352 - -0.7
282,352 + -0.2
282,355 - -1.4
282,360 + -0.2
282,361 + -1.1
282,361 - 0.1
282,362 - -0.1
282,364 - -0.7
282,364 + -0.3
282,364 - 1.6
282,375 - 0.3
282,381 + -0.6
282,382 + 0.7
282,387 - -1.4
282,395 + -0.1
282,397 + 0.9
282,401 - -1.7
282,418 - 0.1
282,439 - -0.6
282,522 + 0.2
282,532 + 0.2
282,569 + -0.7
282,579 + -0.4
282,678 - 0.9
282,887 - 10184 mRNA_1816 0.16 -0.2
283,251 - 10184 mRNA_1816 0.31 -2.3
283,858 - 10184 mRNA_1816 0.57 0.6
283,883 - 10184 mRNA_1816 0.58 -1.1
284,062 - 10184 mRNA_1816 0.65 2.4
284,484 - 10184 mRNA_1816 0.83 -0.9
284,620 + 10184 mRNA_1816 0.89 0.3
284,916 - -0.1
284,925 + 0.1
285,737 + 10185 mRNA_1817 0.37 0.1