Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1811

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260255 to 261213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261573 to 264889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265152 to 268202 10180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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260,981 + 10178 mRNA_1810 0.76 0.1
260,996 - 10178 mRNA_1810 0.77 0.2
260,999 + 10178 mRNA_1810 0.78 0.7
261,007 + 10178 mRNA_1810 0.78 -0.9
261,013 - 10178 mRNA_1810 0.79 -0.2
261,015 - 10178 mRNA_1810 0.79 -0.8
261,156 - 0.8
261,169 - -0.2
261,174 - 0.2
261,185 - -2.5
261,299 - -0.2
261,302 + -1.4
261,314 + -1.3
261,348 - -0.7
261,356 + -0.4
261,363 - -1.4
261,364 - -0.7
261,481 - -1.3
261,648 - -0.2
261,654 - 3.8
263,096 - 10179 mRNA_1811 0.46 -0.7
264,832 - 0.3
264,878 + -2.3
265,020 - -0.7
265,146 + 0.6
265,865 - 10180 mRNA_1812 0.23 0.4
265,872 + 10180 mRNA_1812 0.24 -0.9