Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1800

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515 10167 mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047 10168 mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231185 to 232547 10169

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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228,707 + 10167 mRNA_1799 0.69 -2.1
228,859 - 10167 mRNA_1799 0.75 3.9
228,970 - 10167 mRNA_1799 0.79 -0.3
229,001 + 10167 mRNA_1799 0.80 0.2
229,128 - 10167 mRNA_1799 0.85 -1.3
229,129 + 10167 mRNA_1799 0.85 0.8
229,129 - 10167 mRNA_1799 0.85 -0.3
229,148 + 10167 mRNA_1799 0.86 -0.0
229,265 - 0.2
229,415 + 1.0
229,417 + -1.4
229,420 + -1.1
229,438 + 0.3
229,443 + 0.8
229,467 - 0.3
229,467 - -0.7
229,470 + -0.6
229,473 - 0.7
229,475 - 0.9
229,476 - 0.3
229,476 - 0.0
229,481 - 2.1
229,481 + -0.0
229,482 - 0.3
229,487 + -1.1
229,488 + -1.5
229,492 + -0.7
229,492 + -0.9
229,505 + 2.6
229,511 + 0.4
229,613 - -0.0
229,618 + -0.3
229,626 + 0.4
229,627 - -0.1
229,628 + 0.2
229,628 - 0.1
229,635 + -0.9
229,662 + 1.1
229,667 - -0.4
229,786 - 0.4
229,786 + -0.8
229,910 - 10168 mRNA_1800 0.18 1.8
230,079 - 10168 mRNA_1800 0.30 0.2
230,084 + 10168 mRNA_1800 0.30 -0.1
230,215 + 10168 mRNA_1800 0.40 0.2
230,335 + 10168 mRNA_1800 0.48 -1.0
230,398 - 10168 mRNA_1800 0.53 0.9
230,489 + 10168 mRNA_1800 0.60 0.3
230,489 + 10168 mRNA_1800 0.60 -0.7
230,941 + -0.4
231,134 - -0.3
231,148 + -0.1
231,148 + 0.9
231,154 + 1.1
231,163 + -0.8
231,185 - -1.0