Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1790

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1789: 10157 - K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A, at 210969 to 211922 10157 mRNA_1790: 10158 - Hypothetical Protein, at 212184 to 213881 10158 mRNA_1791: 10159 - Hypothetical Protein, at 214130 to 214450 10159 mRNA_1792: 10160 - Hypothetical Protein, at 214724 to 215217 10160

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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211,962 + 0.0
211,964 + 1.5
211,967 - 3.0
211,968 + 0.1
211,979 - 1.7
212,059 + 0.1
212,097 + 0.2
212,441 + 10158 mRNA_1790 0.15 1.6
212,707 - 10158 mRNA_1790 0.31 -0.7
212,988 - 10158 mRNA_1790 0.47 2.9
212,988 + 10158 mRNA_1790 0.47 0.7
213,004 - 10158 mRNA_1790 0.48 -2.3
213,007 - 10158 mRNA_1790 0.48 -0.7
213,123 - 10158 mRNA_1790 0.55 -0.6
213,168 - 10158 mRNA_1790 0.58 1.7
213,239 - 10158 mRNA_1790 0.62 0.7
213,442 + 10158 mRNA_1790 0.74 0.4
213,564 + 10158 mRNA_1790 0.81 -1.2
213,706 - 10158 mRNA_1790 0.90 1.6
214,016 - -0.3
214,019 + 0.2
214,162 - 10159 mRNA_1791 0.10 0.7
214,184 + 10159 mRNA_1791 0.17 1.8
214,190 - 10159 mRNA_1791 0.19 1.3
214,319 - 10159 mRNA_1791 0.59 0.4
214,323 - 10159 mRNA_1791 0.60 -2.6
214,328 - 10159 mRNA_1791 0.62 0.8
214,335 - 10159 mRNA_1791 0.64 1.4
214,336 - 10159 mRNA_1791 0.64 -0.3
214,336 - 10159 mRNA_1791 0.64 -0.5
214,337 + 10159 mRNA_1791 0.64 -0.0
214,347 + 10159 mRNA_1791 0.68 0.3
214,349 - 10159 mRNA_1791 0.68 -1.8
214,357 + 10159 mRNA_1791 0.71 0.0
214,367 + 10159 mRNA_1791 0.74 0.1
214,384 - 10159 mRNA_1791 0.79 3.0
214,461 - 2.5
214,467 + -2.7
214,473 - -0.1
214,484 - 1.4
214,485 + 2.3
214,486 + -0.2
214,520 - 0.4
214,549 - 1.0
214,628 - -0.4
214,772 - 1.8
214,786 - 10160 mRNA_1792 0.13 -0.9