Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1773

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1772: 10140 - K01480 speB agmatinase, at 169490 to 170600 10140 mRNA_1773: 10141 - Hypothetical Protein, at 171350 to 172928 10141 mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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170,357 - 10140 mRNA_1772 0.78 -1.0
170,361 - 10140 mRNA_1772 0.78 0.4
170,521 - 0.6
170,664 - 0.1
170,686 + 2.1
170,820 + 0.2
170,824 + -0.7
170,827 - 1.4
170,837 - 0.4
170,847 - 1.4
170,971 - 1.1
171,115 + 1.4
171,231 - 0.1
171,239 + -0.6
171,240 - 0.6
171,280 + -0.9
171,414 - 0.4
171,608 - 10141 mRNA_1773 0.16 -1.2
171,609 + 10141 mRNA_1773 0.16 -1.6
171,612 - 10141 mRNA_1773 0.17 -0.6
171,853 + 10141 mRNA_1773 0.32 -0.1
171,884 + 10141 mRNA_1773 0.34 -0.1
172,015 + 10141 mRNA_1773 0.42 1.6
172,155 + 10141 mRNA_1773 0.51 -0.5
172,161 + 10141 mRNA_1773 0.51 -1.0
172,295 + 10141 mRNA_1773 0.60 0.0
172,304 - 10141 mRNA_1773 0.60 -0.0
172,430 + 10141 mRNA_1773 0.68 0.6
172,798 + 1.3
172,878 - 0.0
172,916 - -1.2
172,933 + -0.5
173,158 - 0.6
173,224 + 0.3
173,309 - 10142 mRNA_1774 0.18 -0.1
173,366 + 10142 mRNA_1774 0.25 -1.2
173,398 + 10142 mRNA_1774 0.30 0.1
173,504 + 10142 mRNA_1774 0.44 -0.6
173,512 + 10142 mRNA_1774 0.46 -0.2
173,596 + 10142 mRNA_1774 0.57 0.7
173,634 + 10142 mRNA_1774 0.62 -0.6
173,650 + 10142 mRNA_1774 0.65 0.7
173,899 - -3.1