Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1737

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78147 to 80608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80884 to 82688 10105 mRNA_1738: 10106 - Hypothetical Protein, at 82841 to 84052 10106

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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80,622 - 0.4
80,625 - -1.8
80,669 - -1.2
80,789 + -0.8
80,790 - -0.4
80,795 - 0.2
80,803 - 0.3
80,842 + 0.3
80,970 + 0.3
81,115 + 10105 mRNA_1737 0.13 -1.6
81,237 - 10105 mRNA_1737 0.20 -0.2
81,252 + 10105 mRNA_1737 0.20 -1.5
81,257 + 10105 mRNA_1737 0.21 -0.4
81,292 + 10105 mRNA_1737 0.23 0.5
81,735 - 10105 mRNA_1737 0.47 1.7
81,744 + 10105 mRNA_1737 0.48 -1.1
81,747 + 10105 mRNA_1737 0.48 -3.2
81,856 + 10105 mRNA_1737 0.54 -0.0
82,256 - 10105 mRNA_1737 0.76 1.3
82,267 - 10105 mRNA_1737 0.77 -1.5
82,282 + 10105 mRNA_1737 0.77 1.3
82,450 + 10105 mRNA_1737 0.87 -2.1
82,632 - -0.4
82,735 - 0.5
82,875 - 1.2
83,144 - 10106 mRNA_1738 0.25 0.2
83,298 + 10106 mRNA_1738 0.38 -1.4
83,474 + 10106 mRNA_1738 0.52 0.5
83,488 + 10106 mRNA_1738 0.53 -0.0
83,569 - 10106 mRNA_1738 0.60 -0.6
83,653 - 10106 mRNA_1738 0.67 1.4