Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1736

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78147 to 80608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80884 to 82688 10105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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77,176 - -0.8
77,221 - 1.7
77,224 - -2.0
77,234 + -0.4
77,241 + 2.1
77,242 + 2.0
77,251 + -0.5
77,251 + 1.1
77,256 + 1.8
77,260 - -1.6
77,261 + -0.5
77,262 + -0.3
77,262 - 1.0
77,291 + 1.7
77,294 - 0.2
77,295 - -0.4
77,324 + 0.5
77,334 - 2.0
77,339 - -0.2
77,345 - 0.2
77,350 - 3.1
77,350 + 0.4
77,351 + -0.9
77,353 + -0.3
77,360 + -1.3
77,373 - 0.5
77,374 - -2.3
77,386 + -1.1
77,394 - -0.4
77,396 + 1.3
77,399 - 0.4
77,400 + 0.8
77,400 + 0.3
77,407 + 0.2
77,412 - -0.5
77,421 + -0.0
77,422 + 0.1
77,425 + 1.2
77,427 + -0.5
77,427 + -0.4
77,434 + 1.5
77,717 + 1.2
77,722 + 2.2
77,976 - 0.6
78,120 - -2.0
78,287 - 1.1
78,617 + 10104 mRNA_1736 0.19 -0.0
78,775 - 10104 mRNA_1736 0.26 -1.0
78,889 - 10104 mRNA_1736 0.30 1.3
78,898 - 10104 mRNA_1736 0.31 -0.8
78,927 - 10104 mRNA_1736 0.32 -1.4
79,189 + 10104 mRNA_1736 0.42 0.2
79,335 + 10104 mRNA_1736 0.48 2.0
79,343 - 10104 mRNA_1736 0.49 0.2
79,374 - 10104 mRNA_1736 0.50 -0.9
79,382 + 10104 mRNA_1736 0.50 1.3
79,606 - 10104 mRNA_1736 0.59 0.2
80,622 - 0.4
80,625 - -1.8
80,669 - -1.2
80,789 + -0.8
80,790 - -0.4
80,795 - 0.2
80,803 - 0.3
80,842 + 0.3
80,970 + 0.3
81,115 + 10105 mRNA_1737 0.13 -1.6
81,237 - 10105 mRNA_1737 0.20 -0.2
81,252 + 10105 mRNA_1737 0.20 -1.5
81,257 + 10105 mRNA_1737 0.21 -0.4
81,292 + 10105 mRNA_1737 0.23 0.5