Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1723

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38655 to 42471 10091 mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43091 to 44788 10092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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37,660 + -0.7
37,703 - 2.7
37,717 - 1.3
37,735 - 1.8
37,831 - 0.1
37,837 + -1.2
37,921 - 0.8
37,933 - -1.3
37,934 + -2.3
37,934 + 0.5
37,938 + -1.1
37,950 - 0.1
37,951 + 1.9
37,984 - 1.0
38,063 + 0.2
38,063 - -1.0
38,074 - 0.1
38,075 - 0.2
38,083 + 0.9
38,091 - -0.3
38,140 - 0.1
38,248 - 0.1
38,249 - -1.3
38,366 + 0.2
38,384 + 1.4
38,409 + -0.2
38,409 + -0.2
38,929 - 0.6
38,939 + 0.5
38,940 - -1.1
38,963 + 0.6
39,081 + 10091 mRNA_1723 0.11 0.6
39,111 + 10091 mRNA_1723 0.12 -0.6
39,362 - 10091 mRNA_1723 0.19 0.6
39,532 + 10091 mRNA_1723 0.23 -0.3
39,581 + 10091 mRNA_1723 0.24 0.2
39,873 + 10091 mRNA_1723 0.32 0.8
40,035 - 10091 mRNA_1723 0.36 0.6
40,066 - 10091 mRNA_1723 0.37 1.6
40,393 + 10091 mRNA_1723 0.46 0.6
40,399 + 10091 mRNA_1723 0.46 0.7
40,404 - 10091 mRNA_1723 0.46 1.3
40,421 + 10091 mRNA_1723 0.46 -0.1
40,498 - 10091 mRNA_1723 0.48 0.9
40,691 + 10091 mRNA_1723 0.53 1.0
41,019 - 10091 mRNA_1723 0.62 0.1
41,144 - 10091 mRNA_1723 0.65 0.6
41,221 - 10091 mRNA_1723 0.67 1.1
41,286 + 10091 mRNA_1723 0.69 -0.6
41,447 + 10091 mRNA_1723 0.73 -0.5
41,552 + 10091 mRNA_1723 0.76 -1.1
41,624 + 10091 mRNA_1723 0.78 0.9
41,733 - 10091 mRNA_1723 0.81 0.5
41,872 + 10091 mRNA_1723 0.84 1.6
41,929 + 10091 mRNA_1723 0.86 -1.9
41,957 - 10091 mRNA_1723 0.87 0.8
41,973 + 10091 mRNA_1723 0.87 -1.4
42,146 + 0.9
42,171 + -0.5
42,198 + -1.1
42,285 - 0.2
42,287 - 0.3
42,298 + 0.5
42,311 + -0.5
42,354 - 1.5
42,357 - -1.3
42,445 - -2.2
42,592 - 1.3
42,597 + 1.4
42,614 - -1.0
42,623 + -0.9
42,627 - 0.5
42,632 + 0.6
42,637 - -1.7
42,637 - -0.0
42,638 + 2.3
42,644 + 2.7
42,650 + 0.0
42,652 - -1.2
42,660 + 0.2
42,677 - 2.9
42,684 - 0.2
42,714 - -0.1
42,717 + -1.8
42,729 + 0.9
42,737 - -0.9
42,769 - 0.8
42,778 - 1.6
42,782 + -0.2
42,788 + -1.2
42,808 - -0.2
42,824 - 1.8
42,825 + -0.3
42,825 - 0.3
42,826 - -0.5
42,829 + -0.5
42,832 + -0.1
42,839 + -0.0
42,845 - 2.2
42,846 - 1.0
42,847 - -0.6
42,847 - 2.5
42,868 + -0.8
42,874 + -2.3
42,901 + 0.7
42,912 - 0.4
42,923 - -0.1
42,925 - -0.4
42,999 - 1.5
43,027 - 0.9
43,050 + 0.2