Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1721

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34875 to 37390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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31,450 - 10088 mRNA_1720 0.79 -1.9
31,473 + 10088 mRNA_1720 0.79 0.9
31,607 + 10088 mRNA_1720 0.84 -0.7
31,620 - 10088 mRNA_1720 0.85 0.7
31,762 + 10088 mRNA_1720 0.90 -0.6
31,878 - -1.4
32,031 - -0.7
32,173 + 1.2
32,190 - 1.5
32,333 + -1.3
32,336 - 0.3
32,337 - -0.5
32,350 + -1.5
32,350 - 2.4
32,354 + -0.2
32,355 - -0.4
32,356 + -0.9
32,357 + -0.4
32,362 + -2.0
32,547 - -0.1
32,588 + -0.1
32,822 - 10089 mRNA_1721 0.21 1.3
32,823 - 10089 mRNA_1721 0.21 2.3
32,873 - 10089 mRNA_1721 0.23 -0.4
33,180 - 10089 mRNA_1721 0.39 -0.6
33,187 + 10089 mRNA_1721 0.40 0.3
33,822 - 10089 mRNA_1721 0.73 0.1
33,824 - 10089 mRNA_1721 0.73 -0.3
34,606 + -0.0
34,704 + 0.6
34,710 + 0.8
34,717 + -0.9
34,753 - -0.3
34,868 + -0.8
34,948 - -0.8
35,013 - 1.1
35,040 + -0.2
35,159 - 10090 mRNA_1722 0.11 0.6
35,168 + 10090 mRNA_1722 0.12 -1.6