Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1720

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1719: 10087 - Hypothetical Protein, at 27838 to 28571 10087 mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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28,359 - 10087 mRNA_1719 0.71 1.7
28,380 - 10087 mRNA_1719 0.74 -0.6
28,426 - 10087 mRNA_1719 0.80 1.5
28,545 - 1.5
28,694 - -2.3
28,716 - 1.1
28,757 + 0.8
29,016 - -0.0
29,145 - -2.3
29,145 - -0.1
29,449 + -0.9
29,598 + 10088 mRNA_1720 0.14 -0.1
29,598 + 10088 mRNA_1720 0.14 0.1
29,687 + 10088 mRNA_1720 0.17 -2.0
29,721 - 10088 mRNA_1720 0.18 -2.2
29,917 + 10088 mRNA_1720 0.25 -3.1
29,934 + 10088 mRNA_1720 0.25 0.9
30,137 + 10088 mRNA_1720 0.32 0.1
30,166 + 10088 mRNA_1720 0.34 -1.7
30,290 - 10088 mRNA_1720 0.38 -0.0
30,335 - 10088 mRNA_1720 0.39 0.2
30,561 + 10088 mRNA_1720 0.47 -0.9
30,612 + 10088 mRNA_1720 0.49 -1.5
30,790 + 10088 mRNA_1720 0.55 -0.7
30,878 + 10088 mRNA_1720 0.58 -2.8
30,999 - 10088 mRNA_1720 0.63 -0.4
31,332 + 10088 mRNA_1720 0.74 -0.5
31,359 - 10088 mRNA_1720 0.75 0.1
31,450 - 10088 mRNA_1720 0.79 -1.9
31,473 + 10088 mRNA_1720 0.79 0.9
31,607 + 10088 mRNA_1720 0.84 -0.7
31,620 - 10088 mRNA_1720 0.85 0.7
31,762 + 10088 mRNA_1720 0.90 -0.6
31,878 - -1.4
32,031 - -0.7
32,173 + 1.2
32,190 - 1.5
32,333 + -1.3
32,336 - 0.3
32,337 - -0.5
32,350 + -1.5
32,350 - 2.4
32,354 + -0.2
32,355 - -0.4
32,356 + -0.9
32,357 + -0.4
32,362 + -2.0
32,547 - -0.1
32,588 + -0.1
32,822 - 10089 mRNA_1721 0.21 1.3
32,823 - 10089 mRNA_1721 0.21 2.3
32,873 - 10089 mRNA_1721 0.23 -0.4