Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1714

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081 mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15983 to 18222 10082 mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18768 to 21096 10083

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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15,035 - 10081 mRNA_1713 0.63 1.2
15,147 + 10081 mRNA_1713 0.69 -0.3
15,168 - 10081 mRNA_1713 0.71 0.5
15,195 - 10081 mRNA_1713 0.72 -0.2
15,332 - 10081 mRNA_1713 0.81 -0.6
15,394 + 10081 mRNA_1713 0.84 0.0
15,422 - 10081 mRNA_1713 0.86 0.1
15,438 + 10081 mRNA_1713 0.87 -1.1
15,528 + -0.4
15,531 - -2.4
15,579 + 0.6
15,588 - 0.1
15,708 - -1.0
15,756 - 0.4
15,831 - -0.2
15,850 - -1.7
15,852 - -0.5
15,853 - -0.6
15,856 - 0.5
15,858 + -0.4
15,860 - 0.3
15,861 + -0.0
15,879 + 0.9
15,887 - -0.1
15,889 - 0.8
15,897 + -0.2
15,897 + -0.6
16,049 + 0.2
16,192 - -0.7
16,253 - 10082 mRNA_1714 0.12 0.6
16,353 + 10082 mRNA_1714 0.17 -0.7
16,433 - 10082 mRNA_1714 0.20 0.0
16,475 - 10082 mRNA_1714 0.22 -0.3
16,614 + 10082 mRNA_1714 0.28 -0.4
16,658 - 10082 mRNA_1714 0.30 2.0
16,767 - 10082 mRNA_1714 0.35 0.1
16,771 - 10082 mRNA_1714 0.35 -0.6
16,771 - 10082 mRNA_1714 0.35 -0.4
16,802 + 10082 mRNA_1714 0.37 -0.6
16,845 - 10082 mRNA_1714 0.38 0.4
16,849 + 10082 mRNA_1714 0.39 1.4
16,853 - 10082 mRNA_1714 0.39 -0.5
16,868 + 10082 mRNA_1714 0.40 0.3
16,918 - 10082 mRNA_1714 0.42 -0.5
16,945 + 10082 mRNA_1714 0.43 2.1
16,989 - 10082 mRNA_1714 0.45 -0.5
17,060 + 10082 mRNA_1714 0.48 1.6
17,189 - 10082 mRNA_1714 0.54 -1.7
17,379 + 10082 mRNA_1714 0.62 2.4
17,442 - 10082 mRNA_1714 0.65 2.0
17,473 - 10082 mRNA_1714 0.67 1.0
17,609 - 10082 mRNA_1714 0.73 0.4
17,631 - 10082 mRNA_1714 0.74 0.5
17,661 + 10082 mRNA_1714 0.75 -0.6
17,781 - 10082 mRNA_1714 0.80 0.6
18,016 + 0.4
18,044 - 2.6
18,074 + 1.4
18,224 + -3.3
18,235 + 1.2
18,309 + -0.3
18,473 + -1.0
18,600 + 0.2
18,608 + 0.2
18,621 + 0.3
18,775 + 0.4
18,959 - -1.2