Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1712

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1711: 10079 - K01887 RARS, argS arginyl-tRNA synthetase, at 9070 to 11520 10079 mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12015 to 13653 10080 mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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11,779 - 2.8
11,926 + -1.4
11,942 - -0.3
12,141 - 1.3
12,215 - 10080 mRNA_1712 0.12 1.2
12,434 - 10080 mRNA_1712 0.26 -0.0
12,533 - 10080 mRNA_1712 0.32 -0.1
12,588 - 10080 mRNA_1712 0.35 0.3
12,605 - 10080 mRNA_1712 0.36 -0.4
12,636 - 10080 mRNA_1712 0.38 1.1
13,057 + 10080 mRNA_1712 0.64 -0.5
13,118 - 10080 mRNA_1712 0.67 1.3
13,215 + 10080 mRNA_1712 0.73 0.0
13,277 + 10080 mRNA_1712 0.77 2.3
13,521 + 0.2
13,805 - 0.7
13,961 - 0.5
13,969 + -0.6
13,990 - 0.2
14,076 - -3.6
14,109 - 0.6
14,130 - -0.2
14,146 + -0.7
14,250 + 10081 mRNA_1713 0.16 -1.0
14,354 - 10081 mRNA_1713 0.22 0.4
14,391 + 10081 mRNA_1713 0.24 3.2
14,404 + 10081 mRNA_1713 0.25 0.8
14,417 + 10081 mRNA_1713 0.26 -1.4
14,429 + 10081 mRNA_1713 0.27 0.3
14,465 - 10081 mRNA_1713 0.29 1.5
14,506 - 10081 mRNA_1713 0.31 0.8
14,607 - 10081 mRNA_1713 0.37 1.3
14,615 - 10081 mRNA_1713 0.38 -0.6
14,617 + 10081 mRNA_1713 0.38 -0.0
14,639 + 10081 mRNA_1713 0.39 -0.5