Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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26 + -1.2
27 + 0.7
28 + -0.4
31 + -1.4
31 + -1.6
41 + -0.3
66 + 0.1
72 - 0.4
72 - -0.7
93 + 1.3
104 + -0.1
105 + 0.2
108 + 1.7
120 - -0.7
128 + 1.1
135 - -2.0
136 + -1.0
136 - 0.6
137 - -0.1
137 - -1.6
138 + 0.3
139 + -0.5
141 - -0.8
150 - -0.6
151 - -1.2
155 + 0.9
155 + 1.0
156 + -1.2
158 + 0.6
173 - 0.8
175 + 0.2
180 - 1.4
215 + -0.8
220 - -2.8
234 + -0.1
254 - -0.8
283 + 1.2
304 + 0.6
322 + -0.5
324 + -0.5
427 + 1.3
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 -2.7
482 + 10074 mRNA_1706 0.16 1.4
493 - 10074 mRNA_1706 0.18 -0.5
647 + 10074 mRNA_1706 0.36 -0.5
683 - 10074 mRNA_1706 0.40 -0.9
809 + 10074 mRNA_1706 0.55 1.1
842 - 10074 mRNA_1706 0.59 -0.4
844 + 10074 mRNA_1706 0.59 -1.0
848 - 10074 mRNA_1706 0.59 -1.8
902 + 10074 mRNA_1706 0.66 -0.7
949 - 10074 mRNA_1706 0.71 -2.5
949 - 10074 mRNA_1706 0.71 -0.2
950 + 10074 mRNA_1706 0.71 0.6
974 - 10074 mRNA_1706 0.74 0.8
1,016 + 10074 mRNA_1706 0.79 1.9
1,065 + 10074 mRNA_1706 0.85 -1.4
1,118 + -0.7
1,142 + -0.9
1,155 + 0.0
1,272 - 0.0
1,281 + 0.6
1,573 + 10075 mRNA_1707 0.23 0.5
1,625 + 10075 mRNA_1707 0.27 -1.4
1,625 + 10075 mRNA_1707 0.27 1.4
1,628 + 10075 mRNA_1707 0.27 0.8
1,646 + 10075 mRNA_1707 0.28 -0.8
1,649 - 10075 mRNA_1707 0.28 -1.1
1,680 + 10075 mRNA_1707 0.30 -1.1
1,781 + 10075 mRNA_1707 0.36 0.5
1,926 + 10075 mRNA_1707 0.45 0.3
1,996 + 10075 mRNA_1707 0.49 1.2
2,005 - 10075 mRNA_1707 0.50 -1.1
2,010 - 10075 mRNA_1707 0.50 -0.4
2,033 + 10075 mRNA_1707 0.51 -0.2
2,068 + 10075 mRNA_1707 0.53 -1.8
2,076 + 10075 mRNA_1707 0.54 0.8