Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1695

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914848 to 915614 10062 mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916247 to 917394 10063 mRNA_1696: 10064 - BLAST membrane-associating domain protein [Rhizoctonia sola..., at 917668 to 919209 10064

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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915,260 - 10062 mRNA_1694 0.54 -0.2
915,435 - 10062 mRNA_1694 0.77 0.2
915,436 + 10062 mRNA_1694 0.77 1.0
915,436 - 10062 mRNA_1694 0.77 -1.5
915,562 + 1.0
915,842 - -0.1
915,889 - 0.7
916,132 + -1.0
916,152 + 0.1
916,311 + -0.1
916,408 - 10063 mRNA_1695 0.14 1.5
916,438 - 10063 mRNA_1695 0.17 -0.1
916,579 + 10063 mRNA_1695 0.29 -0.6
916,579 + 10063 mRNA_1695 0.29 0.2
916,588 - 10063 mRNA_1695 0.30 1.1
916,691 - 10063 mRNA_1695 0.39 0.1
916,692 + 10063 mRNA_1695 0.39 0.7
916,901 + 10063 mRNA_1695 0.57 -0.4
916,979 + 10063 mRNA_1695 0.64 0.0
917,309 - -0.9
917,316 + 0.4
917,592 - 1.7
917,682 - 0.3
917,725 - -0.3
918,024 + 10064 mRNA_1696 0.23 2.1
918,129 + 10064 mRNA_1696 0.30 0.9
918,218 - 10064 mRNA_1696 0.36 1.7
918,324 - 10064 mRNA_1696 0.43 0.3