Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1693

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908144 to 911524 10060 mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911784 to 914454 10061 mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914848 to 915614 10062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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911,151 - 10060 mRNA_1692 0.89 -0.8
911,463 + 2.5
911,592 - 1.5
911,622 + 0.2
911,635 - -0.1
911,773 + 0.4
911,777 + 0.3
911,933 - -0.1
911,999 - 0.7
912,026 - -0.1
912,307 + 10061 mRNA_1693 0.20 -0.2
912,451 - 10061 mRNA_1693 0.25 1.0
912,582 + 10061 mRNA_1693 0.30 -2.1
912,869 - 10061 mRNA_1693 0.41 -0.8
912,875 + 10061 mRNA_1693 0.41 -0.9
912,938 - 10061 mRNA_1693 0.43 -1.4
912,996 - 10061 mRNA_1693 0.45 -1.3
913,006 + 10061 mRNA_1693 0.46 -0.5
913,062 + 10061 mRNA_1693 0.48 0.0
913,179 + 10061 mRNA_1693 0.52 -1.9
913,210 + 10061 mRNA_1693 0.53 0.6
913,312 - 10061 mRNA_1693 0.57 1.3
913,343 - 10061 mRNA_1693 0.58 1.0
913,413 - 10061 mRNA_1693 0.61 0.3
913,483 - 10061 mRNA_1693 0.64 -1.0
913,704 + 10061 mRNA_1693 0.72 -2.4
913,728 + 10061 mRNA_1693 0.73 1.6
913,917 - 10061 mRNA_1693 0.80 -0.2
913,921 + 10061 mRNA_1693 0.80 0.1
914,048 + 10061 mRNA_1693 0.85 -1.0
914,114 - 10061 mRNA_1693 0.87 1.0
914,261 - -0.4
914,455 + -0.7
914,788 + 0.2
914,798 - -0.0
914,799 - -0.1
914,799 + 0.6
914,801 + 0.2
914,824 - 2.0
914,922 - 0.2
914,953 - 10062 mRNA_1694 0.14 0.7
914,977 + 10062 mRNA_1694 0.17 0.7
915,020 - 10062 mRNA_1694 0.22 -0.2
915,123 - 10062 mRNA_1694 0.36 0.3
915,169 - 10062 mRNA_1694 0.42 -0.8
915,260 - 10062 mRNA_1694 0.54 -0.2
915,435 - 10062 mRNA_1694 0.77 0.2
915,436 + 10062 mRNA_1694 0.77 1.0
915,436 - 10062 mRNA_1694 0.77 -1.5