Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1670

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849506 to 850957 10037 mRNA_1670: 10038 - K15918 GLYK D-glycerate 3-kinase, at 851334 to 852644 10038 mRNA_1671: 10039 - K13344 PEX13 peroxin-13, at 853353 to 854767 10039

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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850,462 - 10037 mRNA_1669 0.66 0.2
850,727 - 10037 mRNA_1669 0.84 -1.9
850,766 + 10037 mRNA_1669 0.87 -0.7
850,921 + -0.9
851,019 - -0.5
851,037 - 1.1
851,047 - 0.5
851,047 - 0.1
851,049 + 0.1
851,055 + 0.7
851,062 - -1.0
851,063 - -2.2
851,082 - -0.8
851,085 + -0.1
851,092 + -0.4
851,098 - -0.3
851,099 - -1.4
851,105 + -0.5
851,142 + -0.1
851,186 + -2.2
851,343 + 0.2
851,344 + 0.4
851,346 - 0.1
851,452 + 1.2
851,460 - 1.3
851,670 + 10038 mRNA_1670 0.26 -1.8
851,738 - 10038 mRNA_1670 0.31 1.0
851,787 - 10038 mRNA_1670 0.35 0.3
852,090 - 10038 mRNA_1670 0.58 1.7
852,096 + 10038 mRNA_1670 0.58 -0.1
852,223 - 10038 mRNA_1670 0.68 -0.3
852,228 - 10038 mRNA_1670 0.68 -0.6
852,378 - 10038 mRNA_1670 0.80 1.1
852,643 - -0.1
852,811 - -2.7
852,952 + -0.1
852,956 - -0.4
852,976 - -0.7
853,104 - -1.0
853,126 - -0.1
853,132 + 0.2
853,247 - 1.5
853,406 + 0.8