Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1668

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842295 to 847609 10035 mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848567 to 849208 10036 mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849506 to 850957 10037

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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847,638 + 1.4
847,640 - -0.3
847,668 + -2.9
847,740 - -0.6
847,780 - -0.2
847,949 + 0.3
847,954 + -1.1
847,961 - 3.0
847,970 - 0.4
848,100 + -2.4
848,116 - 0.3
848,128 - 0.7
848,225 - 3.4
848,242 + 0.5
848,247 - -0.1
848,248 + -0.9
848,250 - 1.5
848,258 - 1.3
848,269 - 0.2
848,279 + 0.1
848,380 + 0.9
848,392 + 0.4
848,394 - -2.3
848,394 + 0.7
848,406 - 1.1
848,418 - 0.8
848,543 - -0.3
848,582 - 0.1
848,869 - 10036 mRNA_1668 0.47 0.4
849,033 - 10036 mRNA_1668 0.73 -0.5
849,281 + 0.2
849,596 + -0.1
849,763 + 10037 mRNA_1669 0.18 0.6
850,040 + 10037 mRNA_1669 0.37 0.7