Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1667

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840920 to 841915 10034 mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842295 to 847609 10035 mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848567 to 849208 10036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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842,070 + -0.3
842,149 + -0.6
842,225 + 0.4
842,641 + -0.0
843,229 + 10035 mRNA_1667 0.18 0.6
843,257 - 10035 mRNA_1667 0.18 -0.2
843,695 - 10035 mRNA_1667 0.26 -0.4
843,818 - 10035 mRNA_1667 0.29 1.7
843,956 - 10035 mRNA_1667 0.31 0.3
844,439 + 10035 mRNA_1667 0.40 -1.6
844,560 - 10035 mRNA_1667 0.43 0.2
844,712 + 10035 mRNA_1667 0.45 0.6
844,986 - 10035 mRNA_1667 0.51 0.6
845,166 + 10035 mRNA_1667 0.54 -1.4
845,243 + 10035 mRNA_1667 0.55 1.1
845,294 + 10035 mRNA_1667 0.56 -0.2
846,035 - 10035 mRNA_1667 0.70 -1.6
846,054 - 10035 mRNA_1667 0.71 -0.7
846,152 - 10035 mRNA_1667 0.73 -1.2
846,153 + 10035 mRNA_1667 0.73 -0.5
846,192 - 10035 mRNA_1667 0.73 -2.3
846,326 - 10035 mRNA_1667 0.76 -0.5
846,329 + 10035 mRNA_1667 0.76 -0.3
846,478 - 10035 mRNA_1667 0.79 -0.4
846,752 - 10035 mRNA_1667 0.84 0.5
846,915 - 10035 mRNA_1667 0.87 1.0
847,097 - -0.3
847,359 + 0.5
847,638 + 1.4
847,640 - -0.3
847,668 + -2.9
847,740 - -0.6
847,780 - -0.2
847,949 + 0.3
847,954 + -1.1
847,961 - 3.0
847,970 - 0.4
848,100 + -2.4
848,116 - 0.3
848,128 - 0.7
848,225 - 3.4
848,242 + 0.5
848,247 - -0.1
848,248 + -0.9
848,250 - 1.5
848,258 - 1.3
848,269 - 0.2
848,279 + 0.1
848,380 + 0.9
848,392 + 0.4
848,394 - -2.3
848,394 + 0.7
848,406 - 1.1
848,418 - 0.8
848,543 - -0.3
848,582 - 0.1