Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1650

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804506 to 806689 10017 mRNA_1650: 10018 - KOG0254 Predicted transporter (major facilitator superfamily), at 807576 to 811155 10018 mRNA_1651: 10019 - SUPERFAMILY--SSF69047, at 811349 to 811874 10019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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806,742 - -0.7
806,759 - -0.3
806,760 + -1.7
806,761 - 0.0
806,770 + 0.1
806,801 + 0.5
806,803 - 0.0
806,819 + 0.2
806,896 + -2.7
806,914 + 0.4
806,926 + 0.6
806,992 - -1.0
807,022 + 2.3
807,087 + -0.0
807,097 + -1.1
807,099 + -0.2
807,123 - -1.2
807,126 - 0.0
807,132 + 1.4
807,141 + 0.1
807,181 - 1.8
807,185 + -0.3
807,190 - 1.1
807,192 - 1.8
807,194 - -0.3
807,200 - 1.3
807,201 + -0.7
807,210 + -1.0
807,214 - 0.3
807,258 - -0.8
807,261 + -0.8
807,264 - -1.0
807,280 - 0.7
807,285 + -0.0
807,294 - 0.9
807,313 + 0.6
807,417 - -1.3
807,434 - 2.8
807,438 + 0.3
807,483 + 0.1
807,483 + -0.4
807,508 - 1.5
807,511 + -0.9
807,517 - -0.1
807,534 - 0.8
807,691 - 0.2
807,705 + 0.5
808,082 - 10018 mRNA_1650 0.14 -0.8
808,109 - 10018 mRNA_1650 0.15 -0.1
808,530 + 10018 mRNA_1650 0.27 -1.3
809,392 + 10018 mRNA_1650 0.51 0.3
810,749 + 10018 mRNA_1650 0.89 -2.7
811,769 - 10019 mRNA_1651 0.80 -0.0
811,877 + -0.5
811,938 + -2.6
811,946 - 0.8