Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1643

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792797 to 794915 10012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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789,439 - 10010 mRNA_1642 0.58 -0.2
789,465 - 10010 mRNA_1642 0.60 0.2
789,547 + 10010 mRNA_1642 0.67 0.6
789,620 + 10010 mRNA_1642 0.73 -0.3
790,019 + -0.6
790,026 - -0.9
790,048 - 1.4
790,057 + 0.6
790,139 - 1.5
790,167 + 0.4
790,184 - 0.8
790,201 + -1.8
790,337 - 1.9
790,348 + -1.3
790,350 - 0.2
790,353 - 0.1
790,359 - -2.3
790,487 - -0.3
790,490 + -0.8
790,496 - 0.9
790,508 + -0.9
790,646 - 10011 mRNA_1643 0.10 -2.0
790,648 + 10011 mRNA_1643 0.10 -1.7
791,239 - 10011 mRNA_1643 0.37 -1.6
792,092 - 10011 mRNA_1643 0.76 -1.5
792,253 + 10011 mRNA_1643 0.83 -0.4
792,274 - 10011 mRNA_1643 0.84 0.8
792,291 - 10011 mRNA_1643 0.85 -0.2
792,315 - 10011 mRNA_1643 0.86 1.0
792,558 - -0.0
792,575 + 0.9
792,683 + 0.2
792,703 + -0.3
792,714 + 0.1
792,715 - -0.6
792,746 - -0.2
792,874 - -1.5
792,876 - -0.1
792,878 + -0.7
792,879 - -0.8
792,902 - -0.9
792,903 - -2.4
793,005 + -1.2
793,054 - 10012 mRNA_1644 0.12 -0.7
793,334 + 10012 mRNA_1644 0.25 1.1