Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1633

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1632: 10000 - K00036 G6PD, zwf glucose-6-phosphate 1-dehydrogenase, at 760062 to 761705 10000 mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762446 to 764135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes "G-D-X-G" family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764315 to 766210 10002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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761,918 - 0.1
761,932 - -0.4
761,940 + -0.4
761,963 + 2.2
762,101 + -0.0
762,235 - -1.9
762,240 - 1.3
762,250 + -0.5
762,282 - -2.0
762,295 + 0.1
762,707 + 10001 mRNA_1633 0.15 -0.2
763,145 - 10001 mRNA_1633 0.41 -0.3
763,319 - 10001 mRNA_1633 0.52 1.7
763,686 - 10001 mRNA_1633 0.73 -0.3
763,697 - 10001 mRNA_1633 0.74 1.3
764,029 + 0.4
764,245 - -1.6
764,261 + -0.2
764,263 - -1.2
764,263 - -0.4
764,269 - 0.5
764,430 - -0.3
764,821 - 10002 mRNA_1634 0.27 -1.4