Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1600

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690460 to 691819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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691,961 + 0.1
692,058 - 1.0
692,091 + 2.0
692,110 + 0.8
692,250 + -0.4
692,383 + -0.2
692,390 + 0.5
692,787 - 9968 mRNA_1600 0.29 1.0
692,820 - 9968 mRNA_1600 0.31 -0.0
693,541 + 9968 mRNA_1600 0.75 -0.1
693,667 + 9968 mRNA_1600 0.83 -1.1
693,850 - -0.4
693,867 - -0.7
694,029 - -0.2
694,041 + 1.3
694,276 - 1.3
694,756 + 9969 mRNA_1601 0.27 1.0