Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1556

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585061 to 586995 9923 mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587080 to 588305 9924 mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588478 to 590403 9925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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586,368 + 9923 mRNA_1555 0.68 -0.3
586,858 + 1.2
587,619 + 9924 mRNA_1556 0.44 0.2
587,660 - 9924 mRNA_1556 0.47 0.8
587,794 - 9924 mRNA_1556 0.58 -0.4
588,088 - 9924 mRNA_1556 0.82 0.6
588,557 + 1.1
588,845 + 9925 mRNA_1557 0.19 0.3
589,243 - 9925 mRNA_1557 0.40 3.9
589,262 + 9925 mRNA_1557 0.41 1.3
589,268 + 9925 mRNA_1557 0.41 -0.5