Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1451

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317721 to 321691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326244 to 328401 9820

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
321,083 - 9818 mRNA_1450 0.85 0.9
321,146 - 9818 mRNA_1450 0.86 -0.3
321,152 - 9818 mRNA_1450 0.86 0.2
321,153 + 9818 mRNA_1450 0.86 -2.3
321,644 - 0.8
321,860 + 0.9
321,903 - 0.4
322,279 - 9819 mRNA_1451 0.11 -0.6
322,898 - 9819 mRNA_1451 0.27 0.3
323,660 + 9819 mRNA_1451 0.46 -0.5
323,737 + 9819 mRNA_1451 0.48 -0.5
323,777 - 9819 mRNA_1451 0.49 1.4
324,666 + 9819 mRNA_1451 0.72 0.2
324,786 + 9819 mRNA_1451 0.75 0.6
324,792 + 9819 mRNA_1451 0.75 0.5
324,956 + 9819 mRNA_1451 0.79 1.2
325,090 - 9819 mRNA_1451 0.83 -0.3
325,261 - 9819 mRNA_1451 0.87 0.9
325,279 + 9819 mRNA_1451 0.88 -1.8
325,560 + -0.4
325,681 + 0.7
325,814 + 0.5
325,834 + 0.0
325,848 - -0.7
325,852 + 0.8
325,854 - 0.1
325,862 - 1.7
325,862 - -0.2
325,862 - 1.4
325,863 + 0.6
325,868 - 0.4
325,875 + -0.1
325,880 - -1.2
325,884 + -0.8
325,931 - -0.1
325,942 - 0.0
325,943 + -0.0
325,982 - 0.0
325,993 - 0.2
325,994 + -0.3
325,996 + 2.7
325,999 + 0.2
326,000 + 0.8
326,002 + 0.4
326,003 - 0.8
326,008 + 0.1
326,010 + 0.1
326,144 - -0.8
326,302 + 1.7