Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1226

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691442 to 693362 9593 mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693784 to 696236 9594 mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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693,224 + 0.2
693,390 + 0.0
693,395 - -1.2
693,521 - 1.8
693,523 + -0.7
693,587 + -0.6
693,710 + 1.7
693,815 - 0.0
694,254 - 9594 mRNA_1226 0.19 -0.7
694,281 + 9594 mRNA_1226 0.20 0.2
694,346 + 9594 mRNA_1226 0.23 -0.5
694,829 - 9594 mRNA_1226 0.43 0.6
694,889 + 9594 mRNA_1226 0.45 -0.1
695,421 - 9594 mRNA_1226 0.67 0.7
695,730 - 9594 mRNA_1226 0.79 -1.3
696,201 - 0.5
696,304 + -0.4
696,348 - 0.2
696,602 - 0.4
696,809 + 2.9
696,818 - 0.4
696,940 - 9595 mRNA_1227 0.13 -0.5
696,948 + 9595 mRNA_1227 0.13 0.1
696,965 + 9595 mRNA_1227 0.14 -0.6
697,024 - 9595 mRNA_1227 0.16 -2.0