Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1089

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381522 to 383960 9457 mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384249 to 386320 9458

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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380,629 - 9456 mRNA_1088 0.41 1.0
381,055 - 9456 mRNA_1088 0.75 0.8
381,182 - 9456 mRNA_1088 0.85 1.2
381,231 + 9456 mRNA_1088 0.89 -0.9
381,239 + 3.1
381,338 + 0.6
381,342 - 1.0
381,356 + -0.7
381,373 + -0.2
381,427 + 0.1
381,448 + -1.0
381,458 + -0.9
381,472 - 1.0
381,597 - 1.3
381,619 + 1.5
381,621 + -0.4
381,642 + 0.2
381,652 + -0.4
381,749 + 0.3
381,763 + -2.1
381,861 - 9457 mRNA_1089 0.14 -0.5
381,921 - 9457 mRNA_1089 0.16 -0.0
382,196 + 9457 mRNA_1089 0.28 2.6
382,202 + 9457 mRNA_1089 0.28 0.6
382,496 + 9457 mRNA_1089 0.40 1.8
382,539 + 9457 mRNA_1089 0.42 0.4
382,540 - 9457 mRNA_1089 0.42 -0.4
382,613 - 9457 mRNA_1089 0.45 1.6
382,796 + 9457 mRNA_1089 0.52 1.7
382,799 - 9457 mRNA_1089 0.52 -1.3
382,888 - 9457 mRNA_1089 0.56 -0.9
382,940 + 9457 mRNA_1089 0.58 -1.4
383,363 + 9457 mRNA_1089 0.75 0.3
383,548 + 9457 mRNA_1089 0.83 1.9
383,689 - 9457 mRNA_1089 0.89 -0.4
383,778 + 2.7
383,807 - 0.9
383,815 + 1.4
384,074 - -1.3