Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1005

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1004: 9372 - K02220 CLB1_2 G2/mitotic-specific cyclin 1/2, at 183792 to 186232 9372 mRNA_1005: 9373 - K08794 CAMK1 calcium/calmodulin-dependent protein kinase I, at 186567 to 188548 9373 mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188789 to 191273 9374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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185,905 - 9372 mRNA_1004 0.87 -1.7
186,118 - 0.7
186,338 - -1.1
186,410 - -0.2
186,489 - -0.1
186,490 + 0.2
186,516 + 0.9
186,517 - 2.1
186,647 - -2.1
186,653 + 0.1
186,804 + 9373 mRNA_1005 0.12 0.7
186,909 - 9373 mRNA_1005 0.17 2.4
186,933 + 9373 mRNA_1005 0.18 0.5
186,934 - 9373 mRNA_1005 0.19 -1.2
186,957 - 9373 mRNA_1005 0.20 0.8
186,962 + 9373 mRNA_1005 0.20 1.2
186,977 - 9373 mRNA_1005 0.21 0.5
187,093 + 9373 mRNA_1005 0.27 2.4
187,503 + 9373 mRNA_1005 0.47 1.3
187,512 - 9373 mRNA_1005 0.48 1.3
187,542 + 9373 mRNA_1005 0.49 0.7
187,964 + 9373 mRNA_1005 0.70 2.8
187,984 - 9373 mRNA_1005 0.71 0.9
187,984 - 9373 mRNA_1005 0.71 1.4
188,119 - 9373 mRNA_1005 0.78 -0.3
188,172 + 9373 mRNA_1005 0.81 -0.3
188,381 - 1.2
188,553 + 0.3
188,565 + 0.6
188,665 - -0.7
188,724 + 0.0
188,859 + -0.3
188,880 + 1.5
189,060 - 9374 mRNA_1006 0.11 0.6
189,140 - 9374 mRNA_1006 0.14 1.1
189,169 + 9374 mRNA_1006 0.15 0.7
189,201 - 9374 mRNA_1006 0.17 0.7
189,351 - 9374 mRNA_1006 0.23 -0.4