Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_997

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160516 to 163771 9364 mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164007 to 168056 9365 mRNA_998: 9366 - Hypothetical Protein, at 168302 to 169013 9366

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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163,109 - 9364 mRNA_996 0.80 -4.2
163,518 + -1.0
163,523 - -3.9
163,813 - 0.6
163,832 - 1.1
163,832 + 0.7
163,836 - 0.5
163,837 + -0.2
163,837 + 0.5
163,839 - 0.6
163,849 + -2.2
163,863 - 0.1
163,863 + 0.8
163,877 - -0.2
163,877 - 0.3
163,880 + -3.6
163,880 - 1.7
163,889 + -0.4
163,892 - -0.3
163,903 + -0.4
163,922 - 0.1
163,926 + 0.3
163,933 - 0.3
163,959 + 0.6
163,976 + -0.0
163,977 + 1.7
163,982 + 0.5
163,994 - 0.2
164,024 + 0.3
164,024 + 1.0
164,030 + 1.3
164,144 + 0.1
164,161 + 1.0
164,298 - 0.9
164,302 + 0.1
164,306 + 0.2
164,316 + 0.1
164,456 - 9365 mRNA_997 0.11 -1.8
164,606 - 9365 mRNA_997 0.15 -0.1
164,846 + 9365 mRNA_997 0.21 -1.0
165,159 + 9365 mRNA_997 0.28 1.9
165,167 - 9365 mRNA_997 0.29 1.2
165,183 - 9365 mRNA_997 0.29 0.2
165,325 + 9365 mRNA_997 0.33 -0.3
165,339 + 9365 mRNA_997 0.33 0.4
165,341 - 9365 mRNA_997 0.33 0.1
165,349 + 9365 mRNA_997 0.33 -1.0
165,641 + 9365 mRNA_997 0.40 0.7
165,731 + 9365 mRNA_997 0.43 -1.4
165,861 + 9365 mRNA_997 0.46 -1.0
165,896 - 9365 mRNA_997 0.47 -0.0
165,899 + 9365 mRNA_997 0.47 -0.0
166,038 - 9365 mRNA_997 0.50 0.1
166,150 + 9365 mRNA_997 0.53 -0.6
166,311 + 9365 mRNA_997 0.57 -0.4
166,461 + 9365 mRNA_997 0.61 1.4
166,751 - 9365 mRNA_997 0.68 -1.2
166,761 - 9365 mRNA_997 0.68 -1.2
166,892 + 9365 mRNA_997 0.71 -0.3
167,297 - 9365 mRNA_997 0.81 0.3
167,457 - 9365 mRNA_997 0.85 0.0
167,457 + 9365 mRNA_997 0.85 -0.3
167,633 - 9365 mRNA_997 0.90 2.7
167,749 - -0.0
167,874 - 1.3
167,887 + -1.1
167,909 - -0.3
168,020 + 0.5
168,057 + 0.4
168,072 + 0.2
168,086 + 0.4
168,514 - 9366 mRNA_998 0.30 0.8
168,644 + 9366 mRNA_998 0.48 1.7
168,669 - 9366 mRNA_998 0.52 -0.4