Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1838 to 6021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1 + -0.1
1 + 0.3
1 + 1.2
1 + 1.3
1 + 1.5
2 + 0.7
2 + 0.5
5 + -0.3
18 + -0.1
30 + 1.0
37 + 0.1
37 + 2.2
41 + 0.2
42 + 0.7
44 + -0.2
49 + 0.2
49 + 1.9
50 + 0.5
54 + 0.5
58 - 1.3
60 - 0.0
60 + 0.4
60 - -0.6
61 - 0.8
61 + -1.7
63 + 1.5
63 + -0.7
63 + -0.1
63 + 2.1
63 + 1.4
63 + 0.2
64 + 0.4
66 - -0.3
66 + -0.8
70 + 1.0
70 + -0.5
70 - 0.0
71 + -0.4
73 + 0.5
75 - -1.2
77 - -3.3
78 + -1.4
78 - -1.0
78 + -0.7
78 + 0.3
78 + -0.3
78 + 0.1
78 + 1.0
78 + -0.6
78 + -0.5
79 + 0.4
81 - 0.0
81 - 3.1
82 + 0.4
85 + 1.6
104 + 0.4
126 + -0.0
126 + -1.7
128 - 2.3
135 + 0.7
142 + -0.3
150 + 2.0
154 + -0.6
157 + -0.6
171 - -0.3
171 + -0.2
172 + -0.3
172 + 1.2
175 - 0.1
176 - 0.8
177 - 1.7
177 - 0.2
191 - 0.1
192 + 1.4
192 + 0.2
192 + 0.5
193 + -1.4
193 + -0.3
193 + 0.9
198 - 0.1
218 + -0.0
225 + -0.7
235 + 0.5
242 + 1.7
263 - -1.8
293 + 0.9
303 + -1.1
333 - -1.1
339 - -2.5
348 + 0.8
349 + -1.9
377 - 0.5
381 - 0.6
469 + -3.6
487 - 9298 mRNA_930 0.10 0.5
722 + 9298 mRNA_930 0.29 0.4
1,641 - 0.3
1,656 - -0.4
1,768 - 1.2
1,778 - 0.7
1,794 + -0.5