Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_849

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2033096 to 2034366 9216 mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2034540 to 2035724 9217

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,034,033 - 9216 mRNA_848 0.74 0.4
2,034,056 - 9216 mRNA_848 0.76 0.2
2,034,149 + 9216 mRNA_848 0.83 0.5
2,034,251 + 0.4
2,034,340 - -0.0
2,034,486 - -1.0
2,034,486 - -0.4
2,034,491 + -0.3
2,034,637 + 3.0
2,034,754 - 9217 mRNA_849 0.18 2.2
2,035,339 - 9217 mRNA_849 0.67 0.1
2,035,487 + 9217 mRNA_849 0.80 2.1
2,035,490 + 9217 mRNA_849 0.80 -0.2
2,035,531 - 9217 mRNA_849 0.84 2.2
2,035,614 - 0.4
2,035,777 - -0.4
2,035,916 + -1.4
2,035,936 + 0.5
2,035,936 + 0.1
2,035,958 - -0.3
2,035,964 + -0.2
2,036,055 - -0.7
2,036,066 - 2.3
2,036,067 + -1.2
2,036,067 - 0.1
2,036,075 + 0.9
2,036,085 - 0.3
2,036,111 + 0.1
2,036,121 + 2.8
2,036,130 - 0.5
2,036,143 + -0.4
2,036,149 - 1.6
2,036,203 + 0.0
2,036,225 + -0.1
2,036,235 - -1.1
2,036,267 + 0.1
2,036,403 - -0.3
2,036,546 + -1.0
2,036,558 - -0.4
2,036,561 + -1.2
2,036,696 - 0.6
2,036,698 - 0.2
2,036,707 - 1.0
2,036,711 + 2.2
2,036,712 + -0.0