Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_686

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1643444 to 1644500 9053 mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1645014 to 1645916 9054 mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1646516 to 1647919 9055

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,644,546 + -0.5
1,644,547 + 2.0
1,644,811 - 0.9
1,644,848 + 1.4
1,644,859 + 2.2
1,644,979 - 0.5
1,645,144 - 9054 mRNA_686 0.14 0.8
1,645,437 - 9054 mRNA_686 0.47 0.0
1,645,577 + 9054 mRNA_686 0.62 0.4
1,645,703 - 9054 mRNA_686 0.76 1.0
1,645,869 + -1.2
1,645,992 - 0.3
1,645,993 + -0.3
1,645,995 - -0.3
1,645,995 - 0.8
1,646,004 - 0.2
1,646,009 - 2.0
1,646,015 - -0.3
1,646,018 + 0.3
1,646,024 + 2.7
1,646,024 + 0.1
1,646,033 - 1.0
1,646,150 - -1.5
1,646,154 - -0.3
1,646,438 + 0.0
1,646,455 - 0.6
1,646,461 + 0.8
1,646,871 - 9055 mRNA_687 0.25 -0.0
1,646,889 + 9055 mRNA_687 0.27 -0.1