Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_683

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_682: 9050 - K01487 E3.5.4.3, guaD guanine deaminase, at 1636253 to 1638256 9050 mRNA_683: 9051 - K01613 psd, PISD phosphatidylserine decarboxylase, at 1638810 to 1640262 9051 mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1640420 to 1643110 9052

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,637,906 + 9050 mRNA_682 0.82 -0.1
1,638,147 - -0.6
1,638,152 + -0.3
1,638,185 - 0.5
1,638,191 + 0.8
1,638,311 - 0.6
1,638,314 - 0.8
1,638,319 - 0.4
1,638,320 - 0.3
1,638,321 + 0.8
1,638,328 + 0.2
1,638,331 - 0.5
1,638,347 - 1.1
1,638,358 + 3.2
1,638,358 - 1.0
1,638,375 + 1.4
1,638,458 - 0.5
1,638,481 - 1.9
1,638,496 + -0.2
1,638,642 - 0.4
1,638,659 + 1.2
1,638,818 + 0.6
1,639,101 - 9051 mRNA_683 0.20 0.1
1,639,267 + 9051 mRNA_683 0.31 -0.7
1,639,284 + 9051 mRNA_683 0.33 1.8
1,639,284 - 9051 mRNA_683 0.33 0.9
1,639,558 + 9051 mRNA_683 0.51 1.3
1,639,562 - 9051 mRNA_683 0.52 -1.0
1,639,803 - 9051 mRNA_683 0.68 -0.6
1,640,250 - 0.6
1,640,279 - -1.9
1,640,287 + 1.0
1,640,297 + -1.1
1,640,298 - -0.1
1,640,360 + 0.3
1,640,410 + 0.9
1,640,414 + 0.2
1,640,430 + 0.6
1,640,519 - 0.1
1,640,540 - 1.2
1,640,550 - 1.7
1,640,559 + -0.5
1,640,563 - -0.3
1,640,569 - -0.2
1,640,571 - 0.6
1,640,588 + 0.9
1,640,588 - -0.4
1,640,591 + 0.6
1,640,603 + 2.7
1,640,603 - -0.2
1,640,613 - 1.2
1,640,617 + -0.0
1,640,623 - -0.5
1,640,625 - 0.1
1,640,627 - 0.5
1,640,629 + -0.1
1,640,629 + 0.3
1,640,636 + 0.4
1,640,675 - 1.5
1,640,691 - 9052 mRNA_684 0.10 0.5
1,640,693 + 9052 mRNA_684 0.10 0.3
1,640,695 - 9052 mRNA_684 0.10 0.9
1,640,696 - 9052 mRNA_684 0.10 -0.4
1,640,701 - 9052 mRNA_684 0.10 0.1
1,640,703 - 9052 mRNA_684 0.11 0.1
1,640,704 - 9052 mRNA_684 0.11 0.8
1,640,708 + 9052 mRNA_684 0.11 -0.2
1,640,746 - 9052 mRNA_684 0.12 0.4
1,640,751 - 9052 mRNA_684 0.12 -0.1
1,640,754 + 9052 mRNA_684 0.12 0.3
1,640,757 + 9052 mRNA_684 0.13 0.0
1,640,766 + 9052 mRNA_684 0.13 1.1
1,640,774 - 9052 mRNA_684 0.13 0.7
1,640,786 - 9052 mRNA_684 0.14 -1.9
1,640,808 + 9052 mRNA_684 0.14 0.1
1,640,827 + 9052 mRNA_684 0.15 -1.1
1,640,834 - 9052 mRNA_684 0.15 0.3
1,640,838 - 9052 mRNA_684 0.16 -0.0
1,640,847 - 9052 mRNA_684 0.16 0.2
1,640,847 - 9052 mRNA_684 0.16 -0.3
1,640,850 + 9052 mRNA_684 0.16 0.4
1,640,852 - 9052 mRNA_684 0.16 0.7
1,640,855 + 9052 mRNA_684 0.16 2.1
1,640,856 + 9052 mRNA_684 0.16 -0.2
1,640,857 + 9052 mRNA_684 0.16 0.1
1,640,859 + 9052 mRNA_684 0.16 0.3
1,640,860 + 9052 mRNA_684 0.16 -0.3
1,640,866 + 9052 mRNA_684 0.17 0.7
1,640,872 + 9052 mRNA_684 0.17 -0.8
1,640,874 + 9052 mRNA_684 0.17 1.3
1,640,875 + 9052 mRNA_684 0.17 0.7
1,640,879 - 9052 mRNA_684 0.17 1.7
1,640,881 - 9052 mRNA_684 0.17 -0.0
1,641,037 + 9052 mRNA_684 0.23 0.2
1,641,167 - 9052 mRNA_684 0.28 3.6