Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_561

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_560: 8928 - Hypothetical Protein, at 1336484 to 1340949 8928 mRNA_561: 8929 - Hypothetical Protein, at 1341305 to 1346099 8929 mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1346639 to 1349486 8930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,340,322 + 8928 mRNA_560 0.86 0.9
1,340,584 + 0.9
1,340,595 + -0.5
1,340,626 - 1.3
1,340,641 + 0.9
1,340,803 - -0.5
1,341,004 + -0.1
1,341,071 - 0.7
1,341,093 + -0.2
1,341,148 - 0.3
1,341,162 - 0.2
1,341,209 - 2.3
1,341,593 - -0.0
1,341,744 - 0.4
1,341,867 - 8929 mRNA_561 0.12 0.4
1,342,077 - 8929 mRNA_561 0.16 1.1
1,342,278 - 8929 mRNA_561 0.20 1.5
1,342,728 + 8929 mRNA_561 0.30 -1.6
1,342,800 - 8929 mRNA_561 0.31 0.4
1,342,920 - 8929 mRNA_561 0.34 2.5
1,342,974 - 8929 mRNA_561 0.35 0.6
1,343,516 - 8929 mRNA_561 0.46 -0.4
1,343,643 + 8929 mRNA_561 0.49 0.7
1,344,037 + 8929 mRNA_561 0.57 0.7
1,344,065 - 8929 mRNA_561 0.58 0.6
1,344,265 + 8929 mRNA_561 0.62 1.0
1,344,507 + 8929 mRNA_561 0.67 0.4
1,344,562 + 8929 mRNA_561 0.68 0.1
1,344,661 + 8929 mRNA_561 0.70 -1.7
1,344,886 + 8929 mRNA_561 0.75 0.3
1,344,958 - 8929 mRNA_561 0.76 0.5
1,344,958 - 8929 mRNA_561 0.76 -0.1
1,344,998 - 8929 mRNA_561 0.77 0.5
1,345,086 + 8929 mRNA_561 0.79 0.4
1,345,103 + 8929 mRNA_561 0.79 -1.2
1,345,200 + 8929 mRNA_561 0.81 -0.4
1,345,691 + 0.9
1,345,703 - -0.6
1,346,132 + 0.6
1,346,132 + 1.9
1,346,150 + 1.4
1,346,179 - 0.5
1,346,257 - 0.2
1,346,270 + -1.2
1,346,409 + 1.8
1,346,434 + 1.6
1,346,566 - 0.7
1,346,577 - 0.2
1,346,583 - -0.9
1,346,586 + 1.5
1,346,603 + 0.3