Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_450

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1047187 to 1047536 8817 mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1048153 to 1050379 8818 mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1050947 to 1052587 8819

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,047,284 - 8817 mRNA_449 0.28 0.2
1,047,988 - 1.2
1,047,995 + 0.3
1,048,012 + -0.5
1,048,018 + 2.5
1,048,037 + 0.2
1,048,039 + 1.0
1,048,042 - -2.4
1,048,049 + -1.0
1,048,194 - 0.5
1,048,585 - 8818 mRNA_450 0.19 1.9
1,048,619 + 8818 mRNA_450 0.21 1.0
1,048,892 + 8818 mRNA_450 0.33 -1.4
1,048,991 - 8818 mRNA_450 0.38 0.6
1,049,013 - 8818 mRNA_450 0.39 0.7
1,049,049 + 8818 mRNA_450 0.40 -0.0
1,049,383 - 8818 mRNA_450 0.55 -0.6
1,050,135 - 8818 mRNA_450 0.89 0.6
1,050,320 - -0.6
1,050,468 - 1.7
1,050,777 - 2.1
1,050,801 - 1.4
1,050,804 + -1.8
1,050,813 + 0.0
1,050,817 + 0.7
1,050,819 - 0.8
1,050,828 + 0.7
1,050,835 - 2.2
1,050,944 + 0.7
1,050,952 - 2.1
1,050,983 + 0.4
1,051,126 - 8819 mRNA_451 0.11 1.0
1,051,158 - 8819 mRNA_451 0.13 -0.5