Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_404

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_403: 8771 - Hypothetical Protein, at 937327 to 938664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939095 to 942093 8772 mRNA_405: 8773 - KOG4563 Cell cycle-regulated histone H1-binding protein, at 942527 to 943923 8773

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
938,188 - 8771 mRNA_403 0.64 2.0
938,327 - 8771 mRNA_403 0.75 0.7
938,351 - 8771 mRNA_403 0.77 -0.8
938,481 + 8771 mRNA_403 0.86 -1.6
938,532 - 0.3
938,545 + 0.9
938,621 + -0.4
938,654 + 2.2
939,082 - 0.7
939,087 + -0.2
939,114 + 2.5
939,190 + -0.0
939,393 + 1.6
939,592 - 8772 mRNA_404 0.17 -0.6
940,557 + 8772 mRNA_404 0.49 -0.8
940,767 - 8772 mRNA_404 0.56 1.3
940,870 - 8772 mRNA_404 0.59 -2.2
940,893 - 8772 mRNA_404 0.60 1.4
941,120 + 8772 mRNA_404 0.68 0.9
941,252 + 8772 mRNA_404 0.72 1.7
941,513 - 8772 mRNA_404 0.81 0.7
941,543 + 8772 mRNA_404 0.82 0.5
941,677 - 8772 mRNA_404 0.86 -0.4
941,927 + 0.7
941,940 + 0.7
941,973 + -0.5
941,973 - -1.5
941,978 + -0.0
942,098 - 2.1
942,116 + 1.6
942,123 - 0.4
942,123 + 0.3
942,125 + 1.4
942,128 + 1.2
942,132 - 1.3
942,146 + -0.4
942,165 + 1.2
942,174 + 1.1
942,175 - 0.4
942,179 + 0.2
942,181 + -0.3
942,196 + -0.1
942,202 + 0.1
942,206 + -0.1
942,208 - -1.3
942,209 + 1.1
942,210 + 1.0
942,211 + 0.7
942,225 - 1.1
942,242 + 0.4