Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_325

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767858 to 770027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770334 to 776057 8693 mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776267 to 777781 8694

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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770,322 + 0.9
770,330 - 1.2
770,456 + 1.4
770,920 + 8693 mRNA_325 0.10 0.2
771,183 - 8693 mRNA_325 0.15 2.1
771,326 + 8693 mRNA_325 0.17 1.4
771,331 + 8693 mRNA_325 0.17 -0.5
771,504 - 8693 mRNA_325 0.20 -0.5
771,842 - 8693 mRNA_325 0.26 -0.8
771,942 - 8693 mRNA_325 0.28 0.0
772,411 - 8693 mRNA_325 0.36 -0.8
772,525 - 8693 mRNA_325 0.38 0.5
772,538 + 8693 mRNA_325 0.39 2.1
773,237 + 8693 mRNA_325 0.51 0.8
773,516 + 8693 mRNA_325 0.56 1.2
774,089 + 8693 mRNA_325 0.66 0.4
774,267 + 8693 mRNA_325 0.69 1.1
774,279 + 8693 mRNA_325 0.69 0.4
774,693 + 8693 mRNA_325 0.76 1.2
774,828 + 8693 mRNA_325 0.79 0.5
774,932 + 8693 mRNA_325 0.80 0.9
775,136 - 8693 mRNA_325 0.84 0.5
775,261 - 8693 mRNA_325 0.86 0.3
775,269 + 8693 mRNA_325 0.86 1.9
775,425 + 8693 mRNA_325 0.89 1.4
775,688 - 1.0
776,012 + -0.1
776,136 - 0.2
776,136 - 0.5
776,139 + -0.1
776,146 - 0.1
776,154 - 1.2
776,164 + 0.1
776,170 - -0.4
776,241 - 1.0
776,478 + 8694 mRNA_326 0.14 0.2
777,052 + 8694 mRNA_326 0.52 -0.2