Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_268

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640868 to 642235 8635 mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642489 to 643919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644049 to 645349 8637

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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641,868 + 8635 mRNA_267 0.73 1.7
642,177 + 0.6
642,303 + 1.3
642,319 - -0.3
642,355 + 0.7
642,419 - 1.7
642,422 + 0.7
642,423 + -1.0
642,427 - -0.7
642,432 + -0.0
642,432 + -0.3
642,581 - -0.2
642,926 + 8636 mRNA_268 0.31 1.7
643,064 + 8636 mRNA_268 0.40 1.1
643,463 - 8636 mRNA_268 0.68 0.4
643,550 - 8636 mRNA_268 0.74 1.0
643,627 + 8636 mRNA_268 0.80 0.4
643,687 - 8636 mRNA_268 0.84 0.6
643,854 + -1.0
643,862 + 1.8
644,252 + 8637 mRNA_269 0.16 0.3
644,404 - 8637 mRNA_269 0.27 2.2
644,465 - 8637 mRNA_269 0.32 -1.1
644,485 - 8637 mRNA_269 0.34 0.1
644,714 - 8637 mRNA_269 0.51 -0.7
644,871 + 8637 mRNA_269 0.63 -0.5