Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_213

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521112 to 523919 8580 mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524056 to 525912 8581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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523,266 - 8580 mRNA_212 0.77 -0.2
523,296 - 8580 mRNA_212 0.78 0.6
523,386 - 8580 mRNA_212 0.81 -0.7
523,414 - 8580 mRNA_212 0.82 1.7
523,425 - 8580 mRNA_212 0.82 1.7
523,425 + 8580 mRNA_212 0.82 0.2
523,431 + 8580 mRNA_212 0.83 0.0
523,431 + 8580 mRNA_212 0.83 -0.1
523,469 + 8580 mRNA_212 0.84 2.3
523,484 + 8580 mRNA_212 0.84 -1.6
523,527 + 8580 mRNA_212 0.86 -0.2
523,531 - 8580 mRNA_212 0.86 2.0
523,539 + 8580 mRNA_212 0.86 1.8
523,551 - 8580 mRNA_212 0.87 1.8
523,554 + 8580 mRNA_212 0.87 -0.4
523,562 + 8580 mRNA_212 0.87 0.7
523,568 + 8580 mRNA_212 0.87 0.7
523,658 - 0.7
523,659 + 0.8
523,673 + 0.8
523,683 + -0.2
523,707 - -0.1
523,713 + -0.2
523,885 + -0.1
523,887 - -0.2
523,962 - -0.4
523,972 + 3.4
523,973 - 1.0
523,986 - 3.9
524,008 - -0.9
524,024 - 0.7
524,358 + 8581 mRNA_213 0.16 0.2
524,838 - 8581 mRNA_213 0.42 -0.2
524,848 + 8581 mRNA_213 0.43 0.4
524,986 - 8581 mRNA_213 0.50 0.5
525,470 - 8581 mRNA_213 0.76 1.2
525,475 + 8581 mRNA_213 0.76 0.5
525,795 + 2.0
526,207 + 0.9
526,371 + 0.5
526,497 - -0.2
526,781 - 1.6
526,786 + -0.4
526,787 + 0.2
526,820 + -0.4