Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_128

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312995 to 315210 8497

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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306,834 - 8495 mRNA_127 0.87 0.5
306,877 - 8495 mRNA_127 0.89 0.6
306,913 + -1.4
307,185 - 1.3
307,205 - 0.8
307,285 + -0.7
307,305 - 1.2
307,482 + 0.1
307,487 + 0.6
307,515 + -1.4
307,600 - 0.3
307,629 + 0.7
307,634 + 2.7
307,719 + -0.6
307,785 - 2.1
307,886 - -1.0
308,051 + 2.2
308,064 - 1.1
308,146 + 8496 mRNA_128 0.12 -0.3
308,397 + 8496 mRNA_128 0.17 -0.2
308,496 + 8496 mRNA_128 0.19 1.1
308,539 + 8496 mRNA_128 0.20 1.1
308,683 + 8496 mRNA_128 0.23 -0.1
308,767 - 8496 mRNA_128 0.25 -0.5
308,779 + 8496 mRNA_128 0.25 -0.7
308,896 - 8496 mRNA_128 0.27 0.2
308,952 + 8496 mRNA_128 0.28 0.8
308,997 - 8496 mRNA_128 0.29 0.1
309,133 + 8496 mRNA_128 0.32 1.4
309,223 - 8496 mRNA_128 0.34 0.5
309,226 + 8496 mRNA_128 0.34 0.4
309,382 - 8496 mRNA_128 0.37 -0.1
309,531 + 8496 mRNA_128 0.41 1.0
309,681 + 8496 mRNA_128 0.44 -0.7
309,702 + 8496 mRNA_128 0.44 -0.4
309,804 + 8496 mRNA_128 0.46 1.4
309,819 - 8496 mRNA_128 0.47 0.2
309,952 - 8496 mRNA_128 0.49 2.1
310,080 - 8496 mRNA_128 0.52 -1.8
310,098 - 8496 mRNA_128 0.53 0.5
310,098 + 8496 mRNA_128 0.53 -0.3
310,236 + 8496 mRNA_128 0.55 0.5
310,239 - 8496 mRNA_128 0.55 -0.1
310,249 - 8496 mRNA_128 0.56 0.1
310,281 - 8496 mRNA_128 0.56 0.8
310,386 + 8496 mRNA_128 0.59 0.8
310,518 + 8496 mRNA_128 0.61 -0.3
310,671 + 8496 mRNA_128 0.65 0.7
310,722 + 8496 mRNA_128 0.66 1.7
310,733 + 8496 mRNA_128 0.66 -0.1
310,997 + 8496 mRNA_128 0.71 0.7
311,103 - 8496 mRNA_128 0.74 0.9
311,253 - 8496 mRNA_128 0.77 0.9
311,442 + 8496 mRNA_128 0.81 -0.0
311,702 - 8496 mRNA_128 0.86 0.2
311,728 + 8496 mRNA_128 0.87 1.0
312,419 - 0.2
312,538 - 0.3
312,542 - 1.7
312,564 - 0.9
312,708 + 0.2
312,811 - 1.1
312,844 - -0.5
312,966 - -0.7
312,983 - 0.3
312,985 + 0.1
312,999 + 1.2
313,176 + -0.3
313,308 + 8497 mRNA_129 0.14 2.4
313,308 + 8497 mRNA_129 0.14 -0.5