Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_127

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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303,311 - 1.5
303,311 - -1.7
303,325 + 0.9
303,439 - 0.5
303,444 + 0.1
303,570 - 1.6
303,840 - 0.4
304,007 - 0.5
304,333 + 1.1
304,439 - 0.1
304,603 + 8495 mRNA_127 0.12 1.4
304,933 - 8495 mRNA_127 0.23 3.3
305,053 - 8495 mRNA_127 0.27 0.1
305,064 + 8495 mRNA_127 0.27 0.6
305,450 - 8495 mRNA_127 0.41 0.0
305,468 - 8495 mRNA_127 0.41 0.3
305,566 - 8495 mRNA_127 0.44 0.0
305,852 + 8495 mRNA_127 0.54 1.0
306,191 - 8495 mRNA_127 0.66 0.1
306,337 + 8495 mRNA_127 0.71 1.1
306,834 - 8495 mRNA_127 0.87 0.5
306,877 - 8495 mRNA_127 0.89 0.6
306,913 + -1.4
307,185 - 1.3
307,205 - 0.8
307,285 + -0.7
307,305 - 1.2
307,482 + 0.1
307,487 + 0.6
307,515 + -1.4
307,600 - 0.3
307,629 + 0.7
307,634 + 2.7
307,719 + -0.6
307,785 - 2.1
307,886 - -1.0
308,051 + 2.2
308,064 - 1.1
308,146 + 8496 mRNA_128 0.12 -0.3