Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8147

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523156 to 525295 16514 mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525577 to 526736 16515 mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527058 to 528382 16516

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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524,590 - 16514 mRNA_8146 0.67 0.4
524,595 + 16514 mRNA_8146 0.67 0.5
524,890 + 16514 mRNA_8146 0.81 -2.8
524,935 - 16514 mRNA_8146 0.83 1.1
525,163 + 0.7
525,179 - 0.3
525,310 - 1.1
525,335 + 0.3
525,338 - 0.3
525,353 - 0.2
525,354 - 0.0
525,474 - -2.1
525,615 - -0.8
525,657 + 1.4
525,766 + 16515 mRNA_8147 0.16 -1.0
525,794 + 16515 mRNA_8147 0.19 0.4
526,113 + 16515 mRNA_8147 0.46 0.6
526,194 - 16515 mRNA_8147 0.53 1.0
526,352 + 16515 mRNA_8147 0.67 0.4
526,530 - 16515 mRNA_8147 0.82 0.8
526,683 - 2.1
526,712 + 0.2
526,812 - -1.2
526,814 - 1.6
526,835 - 1.9
526,835 - 0.5
526,835 + -0.2
526,850 + -0.5
526,860 - -0.1
527,471 - 16516 mRNA_8148 0.31 1.1
527,721 + 16516 mRNA_8148 0.50 1.2