Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7961

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102805 to 103919 16328 mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104119 to 104997 16329 mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105517 to 106511 16330

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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103,249 + 16328 mRNA_7960 0.40 -0.6
103,249 + 16328 mRNA_7960 0.40 0.6
103,297 + 16328 mRNA_7960 0.44 -0.5
103,300 + 16328 mRNA_7960 0.44 -0.5
103,303 + 16328 mRNA_7960 0.45 0.5
103,326 - 16328 mRNA_7960 0.47 1.3
103,759 + 16328 mRNA_7960 0.86 0.8
103,808 + 1.1
103,816 - -0.1
103,945 - 0.9
103,951 + -1.7
103,951 + -0.2
103,976 + -0.1
104,044 + 0.4
104,204 - -0.6
104,257 + 16329 mRNA_7961 0.16 0.1
104,537 + 16329 mRNA_7961 0.48 -0.5
104,710 + 16329 mRNA_7961 0.67 2.0
104,817 - 16329 mRNA_7961 0.79 -0.7
104,839 - 16329 mRNA_7961 0.82 1.0
104,902 + 16329 mRNA_7961 0.89 0.9
104,918 - -0.3
105,104 + -0.5
105,107 - 0.8
105,107 - -1.5
105,110 + -1.0
105,128 - 0.2
105,149 - 0.2
105,246 + 0.4
105,404 - 0.4
105,420 - 0.4
105,458 - 0.9
105,459 - 0.2
105,563 + 0.0
105,648 - 16330 mRNA_7962 0.13 0.4
105,700 - 16330 mRNA_7962 0.18 2.5
105,705 + 16330 mRNA_7962 0.19 -0.2
105,722 - 16330 mRNA_7962 0.21 -1.4
105,788 - 16330 mRNA_7962 0.27 0.3
105,793 + 16330 mRNA_7962 0.28 0.5
105,964 + 16330 mRNA_7962 0.45 1.3
105,967 - 16330 mRNA_7962 0.45 -0.6
105,980 + 16330 mRNA_7962 0.47 0.2