Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7887

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1300856 to 1302140 16254 mRNA_7887: 16255 - HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949, at 1302822 to 1306124 16255 mRNA_7888: 16256 - K12274 SEC72 translocation protein SEC72, at 1306331 to 1307074 16256

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,301,876 + 16254 mRNA_7886 0.79 0.0
1,301,888 - 16254 mRNA_7886 0.80 1.2
1,302,011 - 16254 mRNA_7886 0.90 2.2
1,302,129 - -0.9
1,302,139 - -0.0
1,302,145 - 2.2
1,302,323 + 0.2
1,302,328 + 0.8
1,302,340 - 0.3
1,302,347 + 1.0
1,302,761 - 1.4
1,302,768 - -0.1
1,302,790 + 0.9
1,302,801 + -0.7
1,302,804 - -0.2
1,302,820 + 1.1
1,303,343 - 16255 mRNA_7887 0.16 0.6
1,303,370 + 16255 mRNA_7887 0.17 0.9
1,303,524 + 16255 mRNA_7887 0.21 0.6
1,303,567 + 16255 mRNA_7887 0.23 0.3
1,303,662 + 16255 mRNA_7887 0.25 -0.6
1,303,812 + 16255 mRNA_7887 0.30 -2.5
1,304,234 + 16255 mRNA_7887 0.43 0.1
1,304,267 + 16255 mRNA_7887 0.44 1.7
1,304,543 + 16255 mRNA_7887 0.52 0.4
1,304,991 + 16255 mRNA_7887 0.66 -0.4
1,305,090 - 16255 mRNA_7887 0.69 1.3
1,305,357 - 16255 mRNA_7887 0.77 2.2
1,305,399 + 16255 mRNA_7887 0.78 -0.1
1,305,553 + 16255 mRNA_7887 0.83 2.6
1,305,683 + 16255 mRNA_7887 0.87 0.1
1,306,014 - 1.0
1,306,111 + -0.7
1,306,127 + 1.2
1,306,273 - -1.7
1,306,719 - 16256 mRNA_7888 0.52 -3.4
1,307,029 - -2.6