Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7814

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7813: 16181 - K01476 E3.5.3.1, rocF, arg arginase, at 1128951 to 1130543 16181 mRNA_7814: 16182 - K01620 ltaE threonine aldolase, at 1131411 to 1132941 16182 mRNA_7815: 16183 - Hypothetical Protein, at 1133372 to 1134436 16183

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,130,556 - -1.3
1,130,569 + -0.8
1,130,656 - -0.1
1,130,666 - 0.7
1,130,678 - -0.3
1,130,687 + -0.5
1,130,693 - 0.2
1,130,732 - -0.2
1,130,788 - 1.0
1,130,810 - -1.1
1,130,818 - -0.4
1,130,820 - 1.6
1,130,822 - -0.1
1,130,824 - 0.5
1,130,833 + -1.1
1,130,837 + 0.1
1,130,838 + 1.3
1,130,846 + 1.0
1,131,135 + 0.9
1,131,135 + 0.7
1,131,139 + -0.4
1,131,141 + -0.2
1,131,160 + -0.6
1,131,276 - -0.2
1,131,283 - 0.8
1,131,556 + 3.0
1,131,601 - 16182 mRNA_7814 0.12 -0.0
1,131,825 - 16182 mRNA_7814 0.27 -0.4
1,131,871 - 16182 mRNA_7814 0.30 -0.5
1,131,874 + 16182 mRNA_7814 0.30 -1.9
1,131,879 + 16182 mRNA_7814 0.31 0.5
1,132,143 + 16182 mRNA_7814 0.48 -0.1
1,132,299 + 16182 mRNA_7814 0.58 0.2
1,132,458 - 16182 mRNA_7814 0.68 1.7
1,132,460 - 16182 mRNA_7814 0.69 0.2
1,132,585 + 16182 mRNA_7814 0.77 -0.3
1,132,854 - 0.4
1,133,321 - -1.1
1,133,446 + 2.2
1,133,477 - 1.9
1,133,529 - 16183 mRNA_7815 0.15 -2.4
1,133,620 - 16183 mRNA_7815 0.23 0.5
1,133,759 + 16183 mRNA_7815 0.36 -0.3