Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7547

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7546: 15914 - K04523 UBQLN, DSK2 ubiquilin, at 532517 to 534299 15914 mRNA_7547: 15915 - Hypothetical Protein, at 534942 to 536762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537029 to 539584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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533,942 - 15914 mRNA_7546 0.80 0.4
533,948 - 15914 mRNA_7546 0.80 -1.6
533,952 + 15914 mRNA_7546 0.80 -2.3
533,952 + 15914 mRNA_7546 0.80 0.1
533,961 - 15914 mRNA_7546 0.81 -1.0
533,961 - 15914 mRNA_7546 0.81 -0.3
534,091 - 15914 mRNA_7546 0.88 1.0
534,112 + 15914 mRNA_7546 0.89 0.3
534,254 - 0.5
534,259 + 0.3
534,259 - 1.2
534,262 + 0.2
534,265 + 0.4
534,265 + 0.2
534,284 + 0.5
534,419 - 0.5
534,550 - -0.7
534,563 - 0.7
534,573 + 0.6
535,413 + 15915 mRNA_7547 0.26 -0.4
535,723 - 15915 mRNA_7547 0.43 -0.5
535,750 + 15915 mRNA_7547 0.44 2.6
536,312 + 15915 mRNA_7547 0.75 -0.7
536,336 - 15915 mRNA_7547 0.77 -0.3
536,342 + 15915 mRNA_7547 0.77 1.2
536,434 - 15915 mRNA_7547 0.82 0.6
536,712 - 0.7
536,784 - 0.9
536,793 + -0.4
536,885 - -0.3
536,930 + -0.2
537,063 + 0.6
537,338 - 15916 mRNA_7548 0.12 -0.3
537,378 + 15916 mRNA_7548 0.14 -0.4
537,470 + 15916 mRNA_7548 0.17 1.9